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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgactaaactacttggtagagaagagctgggttggttgatgcaagatctaatttactaattttaatgtcaatttttgggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAAGGTGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGCCTTGCTTACA

Basic information

species Glycine max
transcript GLYMA01G35190.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336468|gb|GR842647.1|GR842647
EST:     AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATG                         GAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
genomic: AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
EST: gi|254345622|gb|GR855958.1|GR855958
EST:     AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATG                         GAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
genomic: AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
EST: gi|14205773|gb|BG839451.1|BG839451
EST:     AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATG                         GAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
genomic: AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
EST: gi|193479799|gb|FK445480.1|FK445480
EST:     TTTGTAC-TTGTTTTTGAGTACATG                         GAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAAACAGTTTTCTNA
genomic: TTTGTACTTTGTTTTTGAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGG-AAAAACTGTTTTCTGA
EST: gi|193578725|gb|FK535299.1|FK535299
EST:     TGATATTTTGTACTTTGTTTTTGAGTACATG                         GAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
genomic: TGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
EST: gi|192299757|gb|FG990052.1|FG990052
EST:     AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATG                         GAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
genomic: AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
EST: gi|208067113|gb|GD862205.1|GD862205
EST:     GAAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTTGAGTACATG                         GAATGCAACCTAT
genomic: GAA-GTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTT-GAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTAT
EST: gi|26048711|gb|CA785164.1|CA785164
EST:     AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATG                         GAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
genomic: AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
EST: gi|22522544|gb|BU081355.1|BU081355
EST:     AGGAAGTTATTCCAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATG                         GAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA
genomic: AGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGgtgggtgact ... ggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttgatgcaagatctaatttactaattttaatgtcaatttttgggtgatgtagGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAAGGTGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGCCTTGCTTACA
          aagatctaatttacta  TA-rich tract