Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttttgagctctataaatttgttttgctggatcttattttaatgtttttctgtagattttctttctagtgattttactctaatttttgccttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCCTATTTAAACACATACGATGGGCGCACCATCCGCTATCCTGACCCACTAA

Basic information

species Glycine max
transcript GLYMA01G31270.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G31270.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g07150.t01 (Vitis vinifera), 3'ss of exon 4
gcttttgagctctataaa----tttgttttgctggatcttattttaatgtttttctgtagattttctttctagtgattttactctaatttttgcc-ttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCCTATTTAAACACATACGATGGGCGCACCATCCGCTATCCTGACCCACTAA
    |  || |  | ||     ||  ||||  ||||  |    ||  |  |   ||| |  |   | ||   |   |  | |  |  | |||| | || ||  |||||||||||||||||||  | ||||| || ||||| || ||||| ||||| ||| | ||||| || |||||||| ||||||||||| ||||| || || |
----tcaagatagaaaagaatcttcttttttgtggacgtgcagtttgtactaaactg-atttaggcatttaggctctgatgcaatgttatttgtcattcttgcagTTTAAGCTCTGCAAGGTGAGGTCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGGCGAACCATCCGCTACCCTGATCCTCTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298173349|gb|HO016685.1|HO016685
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|19054282|gb|BM732949.1|BM732949
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|13788286|gb|BG650878.1|BG650878
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|22932861|gb|BU550000.1|BU550000
EST:     ACACAAAANNTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCCAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|17022544|gb|BM093578.1|BM093578
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|21888286|gb|BQ741499.1|BQ741499
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGG
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGG
EST: gi|8283646|gb|BE021205.1|BE021205
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCCAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|213604822|gb|DB956135.1|DB956135
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|8827979|gb|BE211709.1|BE211709
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|298169248|gb|HO020608.1|HO020608
EST:     ACACAAAAGGTCGATTCCGTCTCCACCCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|298182749|gb|HO031484.1|HO031484
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTAT
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTAT
EST: gi|26268188|gb|CA819251.1|CA819251
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAACTCTGCAAGGTTCGATCTGTTCAATTTGGGGAAAAGGGGATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|18041325|gb|BM309619.1|BM309619
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCCAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|19053906|gb|BM732573.1|BM732573
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|7926146|gb|AW832172.1|AW832172
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|209720298|gb|BW669258.1|BW669258
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|8827265|gb|BE210995.1|BE210995
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCCAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|298188320|gb|HO035013.1|HO035013
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|15203821|gb|BI426589.1|BI426589
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCCAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|298188025|gb|HO031982.1|HO031982
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|192298439|gb|FG988455.1|FG988455
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|14259674|gb|BG882582.1|BG882582
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|9985684|gb|BE659792.1|BE659792
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|192332454|gb|FK024215.1|FK024215
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|298190414|gb|HO032535.1|HO032535
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCGAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|213618374|gb|DB969372.1|DB969372
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|13481264|gb|BG510607.1|BG510607
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCCAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|4289606|gb|AI437495.1|AI437495
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|15813058|gb|BI785333.1|BI785333
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|192298477|gb|FG988478.1|FG988478
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|13790420|gb|BG653011.1|BG653011
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCCAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|298174877|gb|HO014794.1|HO014794
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|298194963|gb|HO043435.1|HO043435
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|16348683|gb|BI974269.1|BI974269
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
EST: gi|298197068|gb|HO041811.1|HO041811
EST:     ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAG                         TTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC
genomic: ACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGAAGAGTCAAAGgtttgtctat ... cttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttctgtagattttctttctagtgattttactctaatttttgccttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCCTATTTAAACACATACGATGGGCGCACCATCCGCTATCCTGACCCACTAA
                                ctctaat  putative branch site (score: 3)
                                      tttttgcctt  CT-rich tract
                          attttactctaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcttttgagctctataaatttgttttgctggatcttattttaatgtttttctgtagattttctttctagtgattttactctaatttttgccttgttatagTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAAAAGGGTATCCCCTATTTAAACACATACGATGGGCGCACCATCCGCTATCCTGACCCACTAA

gcttttg
- - - - - - - - - - - - -tgctgga
- - - - - - - - - - - - - - - - - - - - - - - - ttctgta