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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtctacaattcctgcatctcctcatttatgaacttcaggattctaaagaacaatgtaggtgtaaagacttatttatctcaatttgtggttggcctaatttcagGTTTTTGGTGCCCTTATCATTGCAAAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGT

Basic information

species Glycine max
transcript GLYMA01G27840.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20812039|gb|BQ296517.1|BQ296517
EST:     CAGGCATAATG                         GTTTTTGGTGCCCTTATCATTGCAAAGCTTCTGAGTGTTCCTATTGTCATG
genomic: CAGGCATAATGgttagtctac ... ctaatttcagGTTTTTGGTGCCCTTATCATTGCAAAGCTTCTGAGTGTTCCTATTGTCATG
EST: gi|213599235|gb|DB960003.1|DB960003
EST:     TTGCTGAGTTTAAGCCTGACATAATACATGCATCATCACCAGGCATAATG                         GTTTTTGGTGCCCTTATCATTGCAAAGCTTCTGAGTGTTCCTATTGTCATG
genomic: TTGCTGAGTTTAAGCCTGACATAATACATGCATCATCACCAGGCATAATGgttagtctac ... ctaatttcagGTTTTTGGTGCCCTTATCATTGCAAAGCTTCTGAGTGTTCCTATTGTCATG
EST: gi|254334106|gb|GR849024.1|GR849024
EST:     TTGCTGAGTTTAAGCCTGACATAATACATGCATCATCACCAGGCATAATG                         GTTTTTGGTGCCCTTATCATTGCAAAGCTTCTGAGTGTTCCTATTGTCATG
genomic: TTGCTGAGTTTAAGCCTGACATAATACATGCATCATCACCAGGCATAATGgttagtctac ... ctaatttcagGTTTTTGGTGCCCTTATCATTGCAAAGCTTCTGAGTGTTCCTATTGTCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaatgtaggtgtaaagacttatttatctcaatttgtggttggcctaatttcagGTTTTTGGTGCCCTTATCATTGCAAAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGT
                                           gcctaat  putative branch site (score: 3)
                    ttatttatctcaattt  TA-rich tract