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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttaaaagtgactggaggctagcattgtggagcaaacatttctcctttatatttgtaaatgactatgtctttgttatgcagACTATTTTGAAAATTCCCGGATTCACTGACAATGTTGTAACTCATCTCCTTGCTGGTCTTGGGGCAGGGTTTTTTGCGGTCTGTATTGGCTCCCCAGTTG

Basic information

species Glycine max
transcript GLYMA01G27120.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G27120.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0007g01700.t01 (Vitis vinifera), 3'ss of exon 5
gtgatttaaaag---tgactggaggctagc-attgtggagcaaacattt-ctcctttatatttgtaaatgactatgtctttgttatgcagACTATTTTGAAAATTCCCGGATTCACTGACAATGTTGTAACTCATCTCCTTGCTGGTCTTGGGGCAGGGTTTTTTGCGGTCTGTATTGGCTCCCCAGTTG
||  | || ||    | |     ||    | ||| | |    |  || | |  |||| || || ||  || || | | |||   |||||||| |||||||||||||| || ||||  || |||||| | ||||||||| | |||||| | ||||| || ||||| || ||||||||||||||||||||||
gttgtctacaaagtttcatcattggtggactatttttgtcttatgatgtgcaactttgtaattatatttgcctctttattt-caatgcagACGATTTTGAAAATTCCAGGGTTCAAAGATAATGTTTTGACTCATCTCTTAGCTGGTTTGGGGGCGGGTTTTTTCGCAGTCTGTATTGGCTCCCCAGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254340376|gb|GR858501.1|GR858501
EST:     ATGGTATCATCAATGCTGCTGAATTAGCCAGCTATGATCAAGTGAAACAG                         ACTATTTTGAAAATTCCCGGATTCACTGACAATGTTGTAACTCATCTCCTT
genomic: ATGGTATCATCAATGCTGCTGAATTAGCCAGCTATGATCAAGTGAAACAGgtgatttaaa ... tgttatgcagACTATTTTGAAAATTCCCGGATTCACTGACAATGTTGTAACTCATCTCCTT
EST: gi|254340375|gb|GR858500.1|GR858500
EST:     ATGGTATCATCAATGCTGCTGAATTAGCCAGCTATGATCAAGTGAAACAG                         ACTATTTTGAAAATTCCCGGATTCACTGACAATGTTGTAACTCATCTCCTT
genomic: ATGGTATCATCAATGCTGCTGAATTAGCCAGCTATGATCAAGTGAAACAGgtgatttaaa ... tgttatgcagACTATTTTGAAAATTCCCGGATTCACTGACAATGTTGTAACTCATCTCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggagcaaacatttctcctttatatttgtaaatgactatgtctttgttatgcagACTATTTTGAAAATTCCCGGATTCACTGACAATGTTGTAACTCATCTCCTTGCTGGTCTTGGGGCAGGGTTTTTTGCGGTCTGTATTGGCTCCCCAGTTG
                                         tctttgtt  CT-rich tract
                   tttatatttgtaaatg  TA-rich tract