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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggagcactaaccaattctatctgacaacattgaaacaatttctattcttttttagtgcaacagtggcttagatgcttcatttgcagGCTAGTTACTACAGAGGTGAGATTCTTCCATTGTTGAAGCGACATAAGGTTGTACAGTTTACTCACACAGATTCCCGGCTCGCCAACAATGGCCTTGCTT

Basic information

species Glycine max
transcript GLYMA01G27000.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G27000.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0007g01650.t01 (Vitis vinifera), 3'ss of exon 5
gtatggagcactaaccaattctatctgacaacattgaaacaatttctattcttttttagtgcaacagtggcttagatgcttcatttgcagGCTAGTTACTACAGAGGTGAGATTCTTCCATTGTTGAAGCGACATAAGGTTGTACAGTTTACTCACACAGATTCCCGGCTCGCCAACAATGGCCTTGCTT
||||| ||   |||  |||        |||| |    | |  ||||  ||||  |||  |  | |  | ||||||||| |||||||||||||||||||||||||||| ||||| || ||| |  | ||||| ||||||||  ||   ||||| ||||| || || || || || || |||||||||||  
gtatgaagtcttaa--aat--------acaaaagcacacccctttcatttctcattttttagagctttagcttagatgtttcatttgcagGCTAGTTACTACAGAGGGGAGATGCTCCCACTACTTAAGCGGCATAAGGTAATAAGATTTACCCACACTGACTCACGACTTGCGAATAATGGCCTTGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaacaatttctattcttttttagtgcaacagtggcttagatgcttcatttgcagGCTAGTTACTACAGAGGTGAGATTCTTCCATTGTTGAAGCGACATAAGGTTGTACAGTTTACTCACACAGATTCCCGGCTCGCCAACAATGGCCTTGCTT
                                           cttcattt  CT-rich tract
     aatttctattcttttt  TA-rich tract