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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggcacaaaactaagttgcttatttattatcatctcaattcaatataagtgttttctcttcctttatttactacatttgcatgtgaatttgttttttcctccatattgatgttgatacaagatttttcgtggtgcagCTTGATGTGACTTCTTCCCAACTTCTTGTGAATGATGGGTTCTTCAGGGATTCTGGCTTCAGAAAACAACTTTCAGACACAGTGAACTCATTGTTGGATT

Basic information

species Glycine max
transcript GLYMA01G24530.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600152|gb|DB964316.1|DB964316
EST:     CTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGCCAG                         CTTGATGTGACTTCTTCCCAACTTCTTGTGAATGATGGGTTCTTCAGGGAT
genomic: CTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGCCAGgttggcacaa ... cgtggtgcagCTTGATGTGACTTCTTCCCAACTTCTTGTGAATGATGGGTTCTTCAGGGAT
EST: gi|254314110|gb|GR831739.1|GR831739
EST:     CTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGCCAG                         CTTGATGTGACTTCTTCCCAACTTCTTGTGAATGATGGGTTCTTCAGGGAT
genomic: CTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGCCAGgttggcacaa ... cgtggtgcagCTTGATGTGACTTCTTCCCAACTTCTTGTGAATGATGGGTTCTTCAGGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaatttgttttttcctccatattgatgttgatacaagatttttcgtggtgcagCTTGATGTGACTTCTTCCCAACTTCTTGTGAATGATGGGTTCTTCAGGGATTCTGGCTTCAGAAAACAACTTTCAGACACAGTGAACTCATTGTTGGATT
                                        tttttcgt  CT-rich tract
     tttgtttttt  TA-rich tract