1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtagaattgaaactttagtcataaatgaaatgctcataatttttatttgatcctgtgtcaacctcttcatcttttactttgtcttcagGGAAGTTTCAAACTGAAATCGGAAAAAGTTGGGCGGCTGAGATCATTTCAAGAAGAAAATCTTTATCAGCAAAAAGGCCACGTTGATATAGTGCCTGACA
species | Glycine max |
transcript | GLYMA01G23210.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACATGGAAAAGTGTTGGATGAATTCTTCCGTTCAACTGCAG GGAAGTTTCAAACTGGAATCGGGAAAAGTTGGGCGGCTGAGATCATTTCAAEST: gi|120531682|gb|EH259815.1|EH259815
genomic: AACATGGAAAAGTGTTGGATGAATTCTTCCTTTCAACTGCAGgtagaattga ... ttgtcttcagGGAAGTTTCAAACTGAAATCGGAAAAAGTTGGGCGGCTGAGATCATTTCAA
EST: GACATGGAAAAGTGTTGGATGAATTCTTCCTTTCAACTGCAG GGAAGTTTCAAACTGAAATCGGAAAAAGTTGGGCGGCTGAGATCATTTCAA
genomic: AACATGGAAAAGTGTTGGATGAATTCTTCCTTTCAACTGCAGgtagaattga ... ttgtcttcagGGAAGTTTCAAACTGAAATCGGAAAAAGTTGGGCGGCTGAGATCATTTCAA
tcataatttttatttgatcctgtgtcaacctcttcatcttttactttgtcttcagGGAAGTTTCAAACTGAAATCGGAAAAAGTTGGGCGGCTGAGATCATTTCAAGAAGAAAATCTTTATCAGCAAAAAGGCCACGTTGATATAGTGCCTGACA
atttgat putative branch site (score: 5)
cctcttcatcttttac putative PPT
atttttatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaattgaaactttagtcataaatgaaatgctcataatttttatttgatcctgtgtcaacctcttcatcttttactttgtcttcagGGAAGTTTCAAACTGAAATCGGAAAAAGTTGGGCGGCTGAGATCATTTCAAGAAGAAAATCTTTATCAGCAAAAAGGCCACGTTGATATAGTGCCTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA