1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acccattttaccctttttatctttattttctatgtcatttttcttgagtctcgtgccctaaatcatggtctaagatattttgtttttttgtcttgtacagAAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAATGCAAGTTCACAAGCAGGCCCTTTATTTCTTGTGGGGAACATTTTTGTTCAGCCAC
species | Glycine max |
transcript | GLYMA01G21900.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGATGAAGGTTGATGGCCTAACCAATGATGAAGTCAAAAGTCATTTACAG AAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAATGCAAGTEST: gi|192318502|gb|FK006174.1|FK006174
genomic: TGATGAAGGTTGATGGCCTAACCAATGATGAAGTCAAAAGTCATTTACAGgtttgtgttg ... tcttgtacagAAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAATGCAAGT
EST: TGATGAAGGTTGATGGCCTAACCAATGATGAAGTCAAAAGTCATTTACAG AAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAATGCAAGT
genomic: TGATGAAGGTTGATGGCCTAACCAATGATGAAGTCAAAAGTCATTTACAGgtttgtgttg ... tcttgtacagAAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAATGCAAGT
gagtctcgtgccctaaatcatggtctaagatattttgtttttttgtcttgtacagAAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAATGCAAGTTCACAAGCAGGCCCTTTATTTCTTGTGGGGAACATTTTTGTTCAGCCAC
ccctaaa putative branch site (score: 3)
ttttgtttttttgtct putative PPT
tctaagatattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccattttaccctttttatctttattttctatgtcatttttcttgagtctcgtgccctaaatcatggtctaagatattttgtttttttgtcttgtacagAAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAATGCAAGTTCACAAGCAGGCCCTTTATTTCTTGTGGGGAACATTTTTGTTCAGCCAC
- - - - - - - - - - - - - - -ctatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - -cgtgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggtc