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...gtggccaatcatctataaaacatctacttggttttttttttttaagaaattcatttaacctgcaccatattttgctttgctatgtatccataagattcagGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTTCTTCATCTCAATTTTTTGGAGATCAGAACAAAGCTGCAGATGTGGATTCTCAAG
species | Glycine max |
transcript | GLYMA01G12340.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA AEST: gi|8670479|gb|BE191586.1|BE191586
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA AEST: gi|8670479|gb|BE191586.1|BE191586
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA AEST: gi|8670479|gb|BE191586.1|BE191586
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA AEST: gi|8670479|gb|BE191586.1|BE191586
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA AEST: gi|8670479|gb|BE191586.1|BE191586
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA AEST: gi|10255901|gb|BE823667.1|BE823667
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATGGTGGCTTTCCAAAGAAATNNGGGCCAAGTTCCTCCAAAGTGCAAATTCAEST: gi|10255901|gb|BE823667.1|BE823667
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATGGTGGCTTTCCAAAGAAATNNGGGCCAAGTTCCTCCAAAGTGCAAATTCAEST: gi|254314431|gb|GR832016.1|GR832016
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAATTCAEST: gi|254314431|gb|GR832016.1|GR832016
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAATTCAEST: gi|9564183|gb|BE473692.1|BE473692
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAATTCAEST: gi|9564183|gb|BE473692.1|BE473692
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAATTCAEST: gi|27424144|gb|CA935664.1|CA935664
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA AEST: gi|27424144|gb|CA935664.1|CA935664
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA AEST: gi|27424144|gb|CA935664.1|CA935664
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA AEST: gi|27424144|gb|CA935664.1|CA935664
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA AEST: gi|27424144|gb|CA935664.1|CA935664
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA AEST: gi|27424144|gb|CA935664.1|CA935664
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA AEST: gi|22524240|gb|BU083051.1|BU083051
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... taagattcag-
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAATTCAEST: gi|22524240|gb|BU083051.1|BU083051
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAATTCAEST: gi|254330187|gb|GR839740.1|GR839740
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAATTCAEST: gi|254330187|gb|GR839740.1|GR839740
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAATTCAEST: gi|7590561|gb|AW706311.1|AW706311
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAATTCAEST: gi|7590561|gb|AW706311.1|AW706311
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGC--A---Agtaagccata ... taagat
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAATTCA
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGC--A---Agtaagccata ... taagat
gaaattcatttaacctgcaccatattttgctttgctatgtatccataagattcagGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTTCTTCATCTCAATTTTTTGGAGATCAGAACAAAGCTGCAGATGTGGATTCTCAAG
atttaac putative branch site (score: 3)
atatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggccaatcatctataaaacatctacttggttttttttttttaagaaattcatttaacctgcaccatattttgctttgctatgtatccataagattcagGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTTCTTCATCTCAATTTTTTGGAGATCAGAACAAAGCTGCAGATGTGGATTCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - ccaatca
- - - - - - - - - - - -ctacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgta