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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaaatagttatctttgtttgcagatgtatgctagaagtgcctgttggttgttggtttttcatttgaccactaattatcctaatgaaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTTCCATCTTCAACAAACAGTATGCCTGCTGGGCCATCTCCGACATCTCGGT

Basic information

species Glycine max
transcript GLYMA01G12340.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27424144|gb|CA935664.1|CA935664
EST:     AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAG                         CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
genomic: AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGgtatgtaaat ... gaaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: gi|26048259|gb|CA784787.1|CA784787
EST:     AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAG                         CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
genomic: AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGgtatgtaaat ... gaaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: gi|15663128|gb|BI700499.1|BI700499
EST:     AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAG                         CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
genomic: AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGgtatgtaaat ... gaaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: gi|8670479|gb|BE191586.1|BE191586
EST:     AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAG                         CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
genomic: AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGgtatgtaaat ... gaaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
EST: gi|7028815|gb|AW458598.1|AW458598
EST:     AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAG                         CCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT
genomic: AAAAAGCAGTGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGgtatgtaaat ... gaaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctgttggttgttggtttttcatttgaccactaattatcctaatgaaaatgcagCCAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTTCCATCTTCAACAAACAGTATGCCTGCTGGGCCATCTCCGACATCTCGGT
                                      tcctaat  putative branch site (score: 2)
 tttttcattt  TA-rich tract