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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatagttagatttgacactcatattacaaaagttttgactgttttatttatatcagttgctcgatgatccgaactcattagttcttgtataccaactataacagtgccttctctgtttgtgtccactttgttttcctactgttaaactgacttctgctattgtttttcctacctatttccttttgtttcaacagGAACCACAGTTAACAGCTTGCGAAGCATTTGATGTGCATAGAAAACCTTTTTCATTATGATATTACTATTACTCAATATTCTTTATTCTACAATTTGTTT

Basic information

species Glycine max
transcript GLYMA01G10880.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020632|gb|CX707374.1|CX707374
EST:     CCATGCTTTTGACCGGAGGTAGTCTCAGCGGCGTCGGTGGACTGAGACAG                         GAACCACAGTTAACAGCTTGCGAAGCATTTGATGTGCATAGAAAACCTTTT
genomic: CCATGCTTTTGACCGGAGGTAGTCTCAGCGGCGTCGGTGGACTGAGACAGgtaatatagt ... gtttcaacagGAACCACAGTTAACAGCTTGCGAAGCATTTGATGTGCATAGAAAACCTTTT
EST: gi|151404758|gb|EV274572.1|EV274572
EST:     CCATGCTTTTGACCGGAGGTAGTCTCAGCGGCGTCGGTGGACTGAGACAG                         GAACCACAGTTAACAGCTTGCGAAGCATTTGATGTGCATAGA
genomic: CCATGCTTTTGACCGGAGGTAGTCTCAGCGGCGTCGGTGGACTGAGACAGgtaatatagt ... gtttcaacagGAACCACAGTTAACAGCTTGCGAAGCATTTGATGTGCATAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttaaactgacttctgctattgtttttcctacctatttccttttgtttcaacagGAACCACAGTTAACAGCTTGCGAAGCATTTGATGTGCATAGAAAACCTTTTTCATTATGATATTACTATTACTCAATATTCTTTATTCTACAATTTGTTT
     aactgac  putative branch site (score: 2)
                    ttgtttttcctaccta  putative PPT
                  tattgttttt  TA-rich tract