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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctactcattagtttttttaaaaaagaaaaacacctggattattgaaaattttgagaatcacaatgaaaattatctggctgcagatgttgatttaattgtgcttttttctgcctgccaattgttgcttatagttggaaactggaaaatcttgctgaattcaacaacattggctgcacttgtagGTTGAGGATCATGAGCTTGCAGATGTTGCTGCAGTCAGTGCTGGGAATGATTATTCAGTTGGAAACATGATTTCCGAGGCTCTGCACCAAGTAGGCAGAA

Basic information

species Glycine max
transcript GLYMA01G09520.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G09520.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0010g00920.t01 (Vitis vinifera), 3'ss of exon 4
--gtaagttctactcattagtttttttaaaaaagaaaaacacct----ggattattgaaaattttgagaatcacaatgaaaattatctggctgcagatgttgatttaattgtgcttttttctgcctgccaattgttgcttatagttggaaactggaaaatcttgctgaattcaacaacattggctgcacttgtagGTTGAGGATCATGAGCTTGCAGATGTTGCTGCAGTCAGTGCTGGGAATGATTATTCAGTTGGAAACATGATTTCCGAGGCTCTGCACCAAGTAGGCAGAA
   | |   ||| |  |||  ||||    |||| ||  | |  |      ||| || |||||| | || ||   ||  || |  || |   ||   || | | | | | | |  | |||      |    | | || | |  | |||   ||||  ||||  |  | ||||                    | ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| || ||||||||||| || ||| | |  || ||||| || |
gtatcaagactatttcttatattttcatgaaaaaaattataattcagaaaattgttaaaaattgtaagcattgaaacaaagagaatata-ttgt--atttgggtattaatattatctttaagaattatataatattacctggaattg---actgccaaataattataaatt--------------------gcagGTTGAGGATCATGAGCTTGCACATGTTGCTGCAGTTAGTGCTGGGAATGATTATACAGTGGGCAACATGATTTCTGATGCTATTCGACAGGTAGGAAGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagttggaaactggaaaatcttgctgaattcaacaacattggctgcacttgtagGTTGAGGATCATGAGCTTGCAGATGTTGCTGCAGTCAGTGCTGGGAATGATTATTCAGTTGGAAACATGATTTCCGAGGCTCTGCACCAAGTAGGCAGAA
               aaaatctt  TA-rich tract