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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttctttggtgtatcaattatcattgagttatttagacgcataacttattatgtaactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAACAGAAGAAAGATGAGGAGGCTGGCCATTTCATGAAGGAAGAGGAGGACC

Basic information

species Glycine max
transcript GLYMA01G07470.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208242588|gb|GE037358.1|GE037358
EST:     CGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAG
genomic: CGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAG
EST: gi|193483902|gb|FK451927.1|FK451927
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA-GACCCTATGAAGAG                         ATGGCAAAGAAAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAA
EST: gi|193496251|gb|FK463307.1|FK463307
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGTAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|193329068|gb|FK293072.1|FK293072
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|207718440|gb|GD700446.1|GD700446
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|208223336|gb|GE024399.1|GE024399
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA-GACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|193314956|gb|FK282128.1|FK282128
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|207682804|gb|GD666421.1|GD666421
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGG
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGG
EST: gi|208271673|gb|GE071885.1|GE071885
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|208045285|gb|GD839777.1|GD839777
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|207839304|gb|GD811205.1|GD811205
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|193594689|gb|FK547626.1|FK547626
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGTAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGC
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGC
EST: gi|208124061|gb|GD921953.1|GD921953
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAA
EST: gi|193596181|gb|FK551840.1|FK551840
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|207808663|gb|GD779474.1|GD779474
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGA
EST: gi|193699567|gb|FK639882.1|FK639882
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTAT
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTAT
EST: gi|207693375|gb|GD674978.1|GD674978
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCC
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCC
EST: gi|193616908|gb|FK570612.1|FK570612
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|193374226|gb|FK342006.1|FK342006
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|208305629|gb|GE109070.1|GE109070
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATAT
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATAT
EST: gi|207761876|gb|GD734149.1|GD734149
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAA-TAAGGAGCAATATAGCCCTA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATAT-GCCCTA
EST: gi|193654145|gb|FK596041.1|FK596041
EST:     CGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATAGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTA
genomic: CGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTAT-GAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTA
EST: gi|208316984|gb|GE112797.1|GE112797
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|208054704|gb|GD850635.1|GD850635
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|193303576|gb|FK271636.1|FK271636
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATA
EST: gi|207803860|gb|GD773589.1|GD773589
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAAC-AAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|207727193|gb|GD704349.1|GD704349
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGNGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|193309589|gb|FK275473.1|FK275473
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|207802265|gb|GD773047.1|GD773047
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCT
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCT
EST: gi|208031366|gb|GD827094.1|GD827094
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAA-TAAGGAGCAATA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATA
EST: gi|193440310|gb|FK410405.1|FK410405
EST:     AAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: AAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|207688410|gb|GD672203.1|GD672203
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGC
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGC
EST: gi|8282859|gb|BE020420.1|BE020420
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|208105387|gb|GD902802.1|GD902802
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|207726930|gb|GD702896.1|GD702896
EST:     CGAAGAGTTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: CGAAGAGT-GGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|207710412|gb|GD692412.1|GD692412
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTAT
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTAT
EST: gi|208142364|gb|GD935362.1|GD935362
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCA
EST: gi|207810862|gb|GD782531.1|GD782531
EST:     CCGAAGAGTGGAAAAACNTGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|208137247|gb|GD937155.1|GD937155
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|193458248|gb|FK422511.1|FK422511
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|193642690|gb|FK594116.1|FK594116
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGG
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGG
EST: gi|193446044|gb|FK414451.1|FK414451
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|207806628|gb|GD776515.1|GD776515
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAA-TAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|193633015|gb|FK580163.1|FK580163
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|193676821|gb|FK617887.1|FK617887
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|193307913|gb|FK271991.1|FK271991
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAA
EST: gi|193713235|gb|FK654430.1|FK654430
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG                         ATAGGCAAAGAACAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAA
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagAT-GGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAA
EST: gi|207789717|gb|GD761779.1|GD761779
EST:     CCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA-GACCCTATGAAGAG                         ATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTT
genomic: TCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAGgtatgcttct ... taactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtatcaattatcattgagttatttagacgcataacttattatgtaactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAACAGAAGAAAGATGAGGAGGCTGGCCATTTCATGAAGGAAGAGGAGGACC
                                          atgtaac  putative branch site (score: 3)
                                                ctctc  CT-rich tract
                                ataacttattatgtaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcttctttggtgtatcaattatcattgagttatttagacgcataacttattatgtaactctcagATGGCAAAGAAAAATAAGGAGCAATATGCCCTAGAAATGGAGGCTTATAAACAGAAGAAAGATGAGGAGGCTGGCCATTTCATGAAGGAAGAGGAGGACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA