1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttttcattctgataaagatcaagatggacacaatattttgctacattttgaaacacgtagatgttttctgaatttggtcttttatttgagcttatgcagCATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTATGGAGACGTGCAGCTGATGCCATTTGTTGACTACTACAGCCTCATCACCT
species | Glycine max |
transcript | GLYMA01G05860.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAATGCAGTTCGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTG CATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTATEST: gi|22525497|gb|BU084308.1|BU084308
genomic: ACAATGCAGTTCGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTGgtgggtattg ... gcttatgcagCATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTAT
EST: ACAATGCAGTTCGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTG CATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTATEST: gi|16995698|gb|BM085070.1|BM085070
genomic: ACAATGCAGTTCGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTGgtgggtattg ... gcttatgcagCATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTAT
EST: ACAATGCAGTTCGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTG CATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTATEST: gi|254325270|gb|GR838151.1|GR838151
genomic: ACAATGCAGTTCGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTGgtgggtattg ... gcttatgcagCATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTAT
EST: ACAATGCAGTTCGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTG CATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTATEST: gi|11412343|gb|BF424354.1|BF424354
genomic: ACAATGCAGTTCGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTGgtgggtattg ... gcttatgcagCATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTAT
EST: ACAATGCAGTTCGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTG CATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTATEST: gi|208288714|gb|GE087527.1|GE087527
genomic: ACAATGCAGTTCGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTGgtgggtattg ... gcttatgcagCATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTAT
EST: ACAATGCAGTTCGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTG CATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTATEST: gi|192312705|gb|FK004393.1|FK004393
genomic: ACAATGCAGTTCGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTGgtgggtattg ... gcttatgcagCATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTAT
EST: ACAATGCAGTTCGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTG CATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTAT
genomic: ACAATGCAGTTCGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTGgtgggtattg ... gcttatgcagCATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTAT
attttgaaacacgtagatgttttctgaatttggtcttttatttgagcttatgcagCATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTATGGAGACGTGCAGCTGATGCCATTTGTTGACTACTACAGCCTCATCACCT
tcttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttcattctgataaagatcaagatggacacaatattttgctacattttgaaacacgtagatgttttctgaatttggtcttttatttgagcttatgcagCATAAAAGCACTGTAGTTAATGAAGAGTTGTGGAGAGAAGCACGGACTTATGGAGACGTGCAGCTGATGCCATTTGTTGACTACTACAGCCTCATCACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - -cattctg
- - - - - - - - - - - - - - - - - - - -tgctaca
- - - - - - - - - - - - - - - - - - - - - - - - - gaaacac