1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aatagacatgatttcatgtttaattatatatgtacatatgcttcccaaagaaaatctgtcggtatatatatatatccttatattatatgctcttttacagCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
species | Glycine max |
transcript | GLYMA01G03940.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGATCAAGAAATCAACTTCTTGTCAGCATGGCACAATTCAGCAGATTCG CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGEST: gi|193414491|gb|FK377463.1|FK377463
genomic: ATGATCAAGAAATCAACTTCTTGTCAGCATGGCACAATTCAGCAGATTCGgtgagaaaga ... tcttttacagCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
EST: AAATCAACTTCTTGTCAGCATGGCACAATTCAGCAGATTCG CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGEST: gi|12689978|gb|BG156314.1|BG156314
genomic: AAATCAACTTCTTGTCAGCATGGCACAATTCAGCAGATTCGgtgagaaaga ... tcttttacagCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
EST: ATGATCAAGAAATCAACTTCTTGTCAGCATGGCACAATTCAGCAGATTCG CACCCTATGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGEST: gi|16348841|gb|BI974436.1|BI974436
genomic: ATGATCAAGAAATCAACTTCTTGTCAGCATGGCACAATTCAGCAGATTCGgtgagaaaga ... tcttttacagCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
EST: ATGATCAAGAAATCAACTTCTTGTCAGCATGGCACAATTCAGCAGATTCG CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
genomic: ATGATCAAGAAATCAACTTCTTGTCAGCATGGCACAATTCAGCAGATTCGgtgagaaaga ... tcttttacagCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
caaagaaaatctgtcggtatatatatatatccttatattatatgctcttttacagCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
tgctctttt CT-rich tract
tatatatatatatcct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatagacatgatttcatgtttaattatatatgtacatatgcttcccaaagaaaatctgtcggtatatatatatatccttatattatatgctcttttacagCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
- - gacatga
- - - - - - -tcatgtt
- - - - - - - - - - - - - - tatgtac
- - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatatgc