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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaactagtactccatgtctgaacctatctcacactgaacattaaaattgtctattttcaaatttgtggcactgctggacttgtgtttaacatcaaaattgtctattaccatcatacagtctatactattgcaggctatttatgtttaataagtattcatttcatgtttccagTCAATGCGGTTAATGGAGGACTTTCTTGATCTTGCTAAAGAAAATACAGAAAAGGATTTGGAAACTTGTGGTATACTTGGTGCCTATCTT

Basic information

species Glycine max
transcript GLYMA01G03710.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532496|gb|EH260629.1|EH260629
EST:     ATTCAGGTGATGGATCCTCAAAGTCGGACAACGAACGGGATGTTCATATT                         TCAATGCGGTTAATGGAGGACTTTCTTGATCTTGCTAAAGAAAATACAGAA
genomic: ATTCAGGTGATGGATCCTCAAAGTCGGACAACGAACGGGATGTTCATATTgtaagaacta ... atgtttccagTCAATGCGGTTAATGGAGGACTTTCTTGATCTTGCTAAAGAAAATACAGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctatactattgcaggctatttatgtttaataagtattcatttcatgtttccagTCAATGCGGTTAATGGAGGACTTTCTTGATCTTGCTAAAGAAAATACAGAAAAGGATTTGGAAACTTGTGGTATACTTGGTGCCTATCTT
                         gtttaat  putative branch site (score: 4)
                                              tgtttcc  putative PPT
                  tatttatgtttaataa  TA-rich tract