Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaactttttgtttccctgatttctttttccgttaattctcatgtttgtcttttcttcatgacttgattttattctcctaatattttttgtttaaatttttatttagCTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACGGCCGGTCAATGCAGTTGCAATGTCACCTCTACTTGATCAT

Basic information

species Glycine max
transcript GLYMA01G03610.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03610.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0011g06630.t01 (Vitis vinifera), 3'ss of exon 4
--------------------------gtatgaactttttgtttccctgatttctttttccgttaattctcatgtttgtcttttctt----catgacttgattttattctcctaatattttttgtttaaatttttatttagCTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACGGCCGGTCAATGCAGTTGCAATGTCACCTCTACTTGATCAT
                           | ||  | ||   |||  || |     | | ||  | ||| || |  || |  | | ||    | | |     |||| | ||  |  | |||| |  |  |    |   |||||||||||| |  || || || || ||||||||||| ||| | |||||||| ||||||||||||||| ||||||| || || |||||||||
gtagcataactcattgttttataattctgtgcccattacttttatctcaccctctgtaccacttattatctttatttttctattttggagcttcatcaagttttttcctgatgttgttttcttgtcgacaaatctcttagCTTTGGGACAGCAGGACGTTAACACTTATCAAGACCTATCTAACAGAACGCCCGGTCAATGCAGTTACAATGTCTCCACTTCTTGATCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209726207|gb|BW659572.1|BW659572
EST:     TGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGANCA-GTCTGCTAGG                         CTTTGGGATACTAGAACATTGACTCTTTATCA-GACATATGTCACAGAACG
genomic: TGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGA-CAAGTCTGCTAGGgtatgaactt ... ttttatttagCTTTGGGATACTAGAACATTGACTCTT-ATCAAGACATATGTCACAGAACG
EST: gi|208147287|gb|GD944954.1|GD944954
EST:     CTGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGACAAGTCTGCTAGG                         CTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACGGAACG
genomic: CTGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGACAAGTCTGCTAGGgtatgaactt ... ttttatttagCTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACG
EST: gi|207842792|gb|GD816436.1|GD816436
EST:     CTGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGACAAGTCTGCTAGG                         CTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACGG
genomic: CTGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGACAAGTCTGCTAGGgtatgaactt ... ttttatttagCTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACGG
EST: gi|209726208|gb|BW659573.1|BW659573
EST:     CTGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGACAAGTCTGCTAGG                         CTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACGG
genomic: CTGCGGATGGTTCGCATTTCCTTACTGGCTCCCTTGACAAGTCTGCTAGGgtatgaactt ... ttttatttagCTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttcatgacttgattttattctcctaatattttttgtttaaatttttatttagCTTTGGGATACTAGAACATTGACTCTTATCAAGACATATGTCACAGAACGGCCGGTCAATGCAGTTGCAATGTCACCTCTACTTGATCAT
                       tcctaat  putative branch site (score: 2)
                                            tttttattt  putative PPT
              attttattctcctaat  TA-rich tract