1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttgattgggtgtatgctcatgcatgaatgaattgttccattaagcataacttaagcatatgatttaatttttcaagtaatgtgaatgttaattttgcagTTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAAACAATGGCAGCAGATCCTACTCTAATGGCCCCTTCATTGGATTTGGACA
species | Glycine max |
transcript | GLYMA01G01850.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAACACCAACTTCGCATTGAAAATGCTCGTTTAAGAGAAGAG TTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAAEST: gi|193641857|gb|FK591101.1|FK591101
genomic: TGAACACCAACTTCGCATTGAAAATGCTCGTTTAAGAGAAGAGgtatatttta ... aattttgcagTTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAA
EST: GTTTCGATGAACACCAACTTCGCATTGAAAATGCTCGTTTAAGAGAAGAG TTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAAEST: gi|27427092|gb|CA938612.1|CA938612
genomic: GTTTCGATGAACACCAACTTCGCATTGAAAATGCTCGTTTAAGAGAAGAGgtatatttta ... aattttgcagTTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAA
EST: TGAACACCAACTTCGCATTGAAAATGCTCGTTTAAGAGAAGAG TTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAAEST: gi|193517294|gb|FK477287.1|FK477287
genomic: TGAACACCAACTTCGCATTGAAAATGCTCGTTTAAGAGAAGAGgtatatttta ... aattttgcagTTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAA
EST: GTTTCGATGAACACCAACTTCGCATTGAAAATGCTCGTTTAAGAGAAGAG TTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAAEST: gi|193702105|gb|FK641735.1|FK641735
genomic: GTTTCGATGAACACCAACTTCGCATTGAAAATGCTCGTTTAAGAGAAGAGgtatatttta ... aattttgcagTTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAA
EST: GTTTCGATGAACACCAACTTCGCATTGAAAATGCTCGTTTAAGAGAAGAG TTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAAEST: gi|193560852|gb|FK521993.1|FK521993
genomic: GTTTCGATGAACACCAACTTCGCATTGAAAATGCTCGTTTAAGAGAAGAGgtatatttta ... aattttgcagTTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAA
EST: GTTTCGATGAACACCAACTTCGCATTGAAAATGCTCGTTTAAGAGAAGAG TTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAAEST: gi|207797146|gb|GD771154.1|GD771154
genomic: GTTTCGATGAACACCAACTTCGCATTGAAAATGCTCGTTTAAGAGAAGAGgtatatttta ... aattttgcagTTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAA
EST: GTTTCGATGAACACCAACTTCGCATTGAAAATGCTCGTTTAAGAGAAGAG TTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAA
genomic: GTTTCGATGAACACCAACTTCGCATTGAAAATGCTCGTTTAAGAGAAGAGgtatatttta ... aattttgcagTTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAA
cataacttaagcatatgatttaatttttcaagtaatgtgaatgttaattttgcagTTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAAACAATGGCAGCAGATCCTACTCTAATGGCCCCTTCATTGGATTTGGACA
tgttaat putative branch site (score: 3)
atttaatttttcaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgattgggtgtatgctcatgcatgaatgaattgttccattaagcataacttaagcatatgatttaatttttcaagtaatgtgaatgttaattttgcagTTAGAACGCGTGTGTTGTCTCACTACAAGATACACTGGGCGTCCAATACAAACAATGGCAGCAGATCCTACTCTAATGGCCCCTTCATTGGATTTGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - -gtatgct
- - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - -ccattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgt