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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttttgtaaactatactttcttgaagttatcatgctgaatcattagctcatcaactactgttgcctcaaatttatacagGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCATTGCTGAGGCATCA

Basic information

species Glycine max
transcript GLYMA01G01740.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G01740.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 5
gtatttt-ttgtaaactatactttc-ttgaagttatcatgctga-atcattagctcatcaactac----tgttgcctcaaat----------ttat------acagGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCATTGCTGAGGCATCA
||||||| || |  |  || ||||  ||  |||||| ||  ||  ||| |   ||      || |     | |  || ||||          ||||      |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | || 
gtattttcttttggagcatgctttagtttcagttataatattgtcatcgtgtacttgctttctgcattccgctatctaaaatgctcaatgttttattttttaacagGGATCTTATCCTTTCAGTCCTTTTGCTATGCCTTCTCCAAATGGCATTGCTGAGACCTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21255865|gb|BQ452753.1|BQ452753
EST:     TTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCG                         GGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCATTGCT
genomic: TTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGgtattttttg ... atttatacagGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCATTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttatcatgctgaatcattagctcatcaactactgttgcctcaaatttatacagGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCATTGCTGAGGCATCA
                                         tcaaatttata  TA-rich tract