1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgtatatacattaattagattgtcattgttgtcacctactgggatgtatttaataacttttttgttttatttccaactcactgatttctgttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTACAAAGCTTTCTATAGAGAATGTGGAGCATCTCCTCATGAAGAGCCTATCT
species | Glycine max |
transcript | GLYMA01G01460.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTACEST: gi|14008620|gb|BG725224.1|BG725224
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTACEST: gi|12688358|gb|BG154694.1|BG154694
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTACEST: gi|27426218|gb|CA937738.1|CA937738
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTACEST: gi|13311489|gb|BG405140.1|BG405140
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: AGTTGNTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTACEST: gi|6501937|gb|AW203310.1|AW203310
genomic: AGTTG-TCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTACEST: gi|308098687|gb|HO760428.1|HO760428
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTEST: gi|193329181|gb|FK295607.1|FK295607
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGT
EST: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG TCGGCCT-CG-A-GATCGAACTATTCCCTTGEST: gi|207746550|gb|GD721537.1|GD721537
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTG
EST: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTACEST: gi|6718923|gb|AW306570.1|AW306570
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTACEST: gi|6069811|gb|AW099417.1|AW099417
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: AAGTTGGCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCATAGCGTACEST: gi|11688213|gb|BF595889.1|BF595889
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
EST: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAG TCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
genomic: AAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGgtgtatatac ... ttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTAC
gtatttaataacttttttgttttatttccaactcactgatttctgttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTACAAAGCTTTCTATAGAGAATGTGGAGCATCTCCTCATGAAGAGCCTATCT
tttctgtt CT-rich tract
taataacttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtatatacattaattagattgtcattgttgtcacctactgggatgtatttaataacttttttgttttatttccaactcactgatttctgttgcttgcagTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTACAAAGCTTTCTATAGAGAATGTGGAGCATCTCCTCATGAAGAGCCTATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA