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...cttggttgttcatttggacttaaattctgtattgtgaaggaaaggggattcacattttttgtttttcatttgtttctgtctgttttgttggggaatccagAGAAGTGGGGAAAGCAGTTGCAAAGATGATAGCCCTTGCACTTGATCTGGATGCTAATTATTTTGATCGGCCAGAAATTCTTGGAGAGCCAATTGCAATT
species | Glycine max |
transcript | GLYMA01G01170.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTCTGCCCGGGTGGAGGGAGACCATGGAAAAGTTCCATCAAGAGACATT AGAAGTGGGGAAAGCAGTTGCAAAGATGATAGCCCTTGCACTTGATCTGGAEST: gi|209712021|gb|BW668422.1|BW668422
genomic: GTTCTGCCCGGGTGGAGGGAGACCATGGAAAAGTTCCATCAAGAGACATTgtatgtatcg ... gggaatccagAGAAGTGGGGAAAGCAGTTGCAAAGATGATAGCCCTTGCACTTGATCTGGA
EST: GTTCTGCCCGGGTGGAGGGAGACCATGGAAAAGTTCCATCAAGAGACATT AGAAGTGGGGAAAGCAGTTGCAAAGATGATAGCCCTTGCACTTGATCTGGAEST: gi|254330589|gb|GR841854.1|GR841854
genomic: GTTCTGCCCGGGTGGAGGGAGACCATGGAAAAGTTCCATCAAGAGACATTgtatgtatcg ... gggaatccagAGAAGTGGGGAAAGCAGTTGCAAAGATGATAGCCCTTGCACTTGATCTGGA
EST: GGAGGGAGACCATGGAAAAGTTCCATCAAGAGACATT AGAAGTGGGGAAAGCAGTTGCAAAGATGATAGCCCTTGCACTTGATCTGGAEST: gi|192295560|gb|FG988134.1|FG988134
genomic: GGAGGGAGACCATGGAAAAGTTCCATCAAGAGACATTgtatgtatcg ... gggaatccagAGAAGTGGGGAAAGCAGTTGCAAAGATGATAGCCCTTGCACTTGATCTGGA
EST: TTCTGCCCGGGTGGAGGGAGACCATGAGAAA-GTTCCATCAAGAGACATT AGAAGTGGGGAAAGCAGTTGCAAAGATGATAGCCCTTGCACTTGATCTGGA
genomic: TTCTGCCCGGGTGGAGGGAGACCATG-GAAAAGTTCCATCAAGAGACATTgtatgtatcg ... gggaatccagAGAAGTGGGGAAAGCAGTTGCAAAGATGATAGCCCTTGCACTTGATCTGGA
ggattcacattttttgtttttcatttgtttctgtctgttttgttggggaatccagAGAAGTGGGGAAAGCAGTTGCAAAGATGATAGCCCTTGCACTTGATCTGGATGCTAATTATTTTGATCGGCCAGAAATTCTTGGAGAGCCAATTGCAATT
attttttgtttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttggttgttcatttggacttaaattctgtattgtgaaggaaaggggattcacattttttgtttttcatttgtttctgtctgttttgttggggaatccagAGAAGTGGGGAAAGCAGTTGCAAAGATGATAGCCCTTGCACTTGATCTGGATGCTAATTATTTTGATCGGCCAGAAATTCTTGGAGAGCCAATTGCAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA