1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcagttccactttcctttctttataaattgttttcttttccccctaaagtctggctttgagaataattttcagtttgtatatggcagaaaatttcaattaatgagttttgtagtttcaatttttttttcttttaactttcttggttagttaaggccttaaactggagacaaaacctaacttggtgatgtgatgtagGTTAATGACACAGTTGGAACAGTGGCTAGAGCAAGATTCAGCAATCAGGATGTCATTGCTGGAGTGATTCTTGGTACTGGGACAAATGCAGCTTATGTAG
species | Glycine max |
transcript | GLYMA01G01060.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGACCAAGTCCTTAGAAAAAATTGGTCTGGATATGCATGTTGCAGCTCTA GTTAATGACACAGTTGGAACAGTGGCTAGAGCAAGATTCAGCAATCANGATEST: gi|6483088|gb|AW202280.1|AW202280
genomic: TGACCAAGTCCTTAGAAAAAATTGGTCTGGATATGCATGTTGCAGCTCTAgtcagttcca ... tgtgatgtagGTTAATGACACAGTTGGAACAGTGGCTAGAGCAAGATTCAGCAATCAGGAT
EST: TGACCAAGTCCTTAGAAAAAATTGGTCTGGATATGCATGTTGCAGCTCTA GTTAATGACACAGTTGGAACAGTGGCTAGAGCAAGATTCAGCAATCANGATEST: gi|16348134|gb|BI973729.1|BI973729
genomic: TGACCAAGTCCTTAGAAAAAATTGGTCTGGATATGCATGTTGCAGCTCTAgtcagttcca ... tgtgatgtagGTTAATGACACAGTTGGAACAGTGGCTAGAGCAAGATTCAGCAATCAGGAT
EST: TCTGGATATGCATGTTGCAGCTCTA GTTAATGACACAGTTGGAACAGTGGCTAGAGCAAGATTCAGCAATCAGGAT
genomic: TCTGGATATGCATGTTGCAGCTCTAgtcagttcca ... tgtgatgtagGTTAATGACACAGTTGGAACAGTGGCTAGAGCAAGATTCAGCAATCAGGAT
tggttagttaaggccttaaactggagacaaaacctaacttggtgatgtgatgtagGTTAATGACACAGTTGGAACAGTGGCTAGAGCAAGATTCAGCAATCAGGATGTCATTGCTGGAGTGATTCTTGGTACTGGGACAAATGCAGCTTATGTAG
acctaac putative branch site (score: 2)
ttaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttccactttcctttctttataaattgttttcttttccccctaaagtctggctttgagaataattttcagtttgtatatggcagaaaatttcaattaatgagttttgtagtttcaatttttttttcttttaactttcttggttagttaaggccttaaactggagacaaaacctaacttggtgatgtgatgtagGTTAATGACACAGTTGGAACAGTGGCTAGAGCAAGATTCAGCAATCAGGATGTCATTGCTGGAGTGATTCTTGGTACTGGGACAAATGCAGCTTATGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT