1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaattttctttacttcttttgtctctccttgttactcacaaaggtgtgtgcaacatgaaagtttgataatggttattgcctccagATAGGATCAACTGAATGGGTAGAAGAGAACAGAGAAATTCTTGCTTCAAAGGCAGTTGCTTACTTGAATGCTGATTGTGTAGTAGGTGGACCAGGGTTCA
species | Glycine max |
transcript | GLYMA01G01000.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTAGAAGAACAATTTTAT-ATGTA-TTGG-ATGCTG-GGAATATGGCCTT ATAGGATCAACTGAATGGGTAGAAGAGA-CAGAGAAATEST: gi|7326540|gb|AW620338.1|AW620338
genomic: CTAGAAGAACAATTTTATTATGTAATTGGGATGCTGAGGAATATGGCCTTgtaattttct ... ttgcctccagATAGGATCAACTGAATGGGTAGAAGAGAACAGAGAAAT
EST: GAACAATTTTATTATGTAATTGGGATGCTGAGGAATATGGCCTT ATAGGATCAACTGAATGGGTAGAAGAGAACAGAGAAATTCTTGCTTCAAAGEST: gi|6665978|gb|AW277437.1|AW277437
genomic: GAACAATTTTATTATGTAATTGGGATGCTGAGGAATATGGCCTTgtaattttct ... ttgcctccagATAGGATCAACTGAATGGGTAGAAGAGAACAGAGAAATTCTTGCTTCAAAG
EST: TAATTGGGATGCTGAGGAATATGGCCTT ATAGGATCAACTGAATGGGTAGAAGAGAACAGAGAAATTCTTGCTTCAAAG
genomic: TAATTGGGATGCTGAGGAATATGGCCTTgtaattttct ... ttgcctccagATAGGATCAACTGAATGGGTAGAAGAGAACAGAGAAATTCTTGCTTCAAAG
gttactcacaaaggtgtgtgcaacatgaaagtttgataatggttattgcctccagATAGGATCAACTGAATGGGTAGAAGAGAACAGAGAAATTCTTGCTTCAAAGGCAGTTGCTTACTTGAATGCTGATTGTGTAGTAGGTGGACCAGGGTTCA
ttgcctcc CT-rich tract
tttgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttctttacttcttttgtctctccttgttactcacaaaggtgtgtgcaacatgaaagtttgataatggttattgcctccagATAGGATCAACTGAATGGGTAGAAGAGAACAGAGAAATTCTTGCTTCAAAGGCAGTTGCTTACTTGAATGCTGATTGTGTAGTAGGTGGACCAGGGTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA