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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttctatgtgtgtgggtctacctgtacatttattgacatatgtggtaccttatttttgtttatggccttctaaaatttgatattcagGTGTACTTTGAAGCAGATGAAGTTCAGGCTGCTATTGTTACTTGTGGGGGTCTGTGTCCTGGGCTCAACACTGTCATTAGGGAATTAGTGTGTGGCTTAC

Basic information

species Glycine max
transcript GLYMA01G00870.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G00870.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os06g05860.1 (Oryza sativa), 3'ss of exon 4
gtatgtttctatgtgtgtgggtctacctgtacatttattgacatatgtggtaccttatttttgtttatggccttctaaaatttgatattcagGTGTACTTTGAAGCAGATGAAGTTCAGGCTGCTATTGTTACTTGTGGGGGTCTGTGTCCTGGGCTCAACACTGTCATTAGGGAATTAGTGTGTGGCTTAC
|||| |  |  ||| |     | |||    |||   | | |  |       | ||  | ||| ||| |  | |  ||  |||   |  ||||||||  |||||| | ||||| || || ||    ||||| || ||||| || ||||| ||||| || |||||||||||||||||| | || ||||||||| 
gtatataacattgtattca--tatactaacaca---aataagttggaaaaaaactattctttttttctcacttcatattattcc-tggtcagGTGTTTTTTGAATCGGATGAGGTCCATGCATGCATTGTCACATGTGGAGGACTGTGCCCTGGACTGAACACTGTCATTAGGGAAATTGTATGTGGCTTAT

upper sequence: GLYMA01G00870.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G004932_T01 (Zea mays), 3'ss of exon 4
---gtatgtttctatgtgtgtgggtctacctgtac-atttattgacatatgtggtaccttatttttgtttatggccttctaaaatttgatattcagGTGTACTTTGAAGCAGATGAAGTTCAGGCTGCTATTGTTACTTGTGGGGGTCTGTGTCCTGGGCTCAACACTGTCATTAGGGAATTAGTGTGTGGCTTAC
     ||    |||      | | | ||| ||    |  |  | ||   | |     || |        | ||| |||    ||  |  | || |||| || ||||   | ||||||||  | ||    ||||| |||||||| || ||||| |||||||| |||||||| || |||||| | |||||||||||  
gtaagatacccctagccaccttg-tttacttgcgggaactcatcactcgtatctaggctgacagaaacctttggactt---gaacct--tttttagGTTTATTTTGGCACCGATGAAGTGAAAGCCTGCATTGTAACTTGTGGAGGCCTGTGCCCTGGGCTTAACACTGTTATCAGGGAACTGGTGTGTGGCTTGT

upper sequence: GLYMA01G00870.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 4
gtatgtttctatgtgtgtgggtctacctgtacatttattgacatatg-tggtaccttatttttgtttatggccttctaaaatttgatattcagGTGTACTTTGAAGCAGATGAAGTTCAGGCTGCTATTGTTACTTGTGGGGGTCTGTGTCCTGGGCTCAACACTGTCATTAGGGAATTAGTGTGTGGCTTAC
||| || | | | ||| |   |  |   | |  |  | ||| | | |    ||  || | | |    ||   ||| |    |||  | | |||||||| |||||  | ||||||||||| ||   |||||| || ||||| ||| | || ||||| |||||||| || ||||||||| |||| ||||||||  
gtaagtctttgtttgt-tatattcatg-gaatttgaaatgataaaagacaataggttttctcttaacatattcttttgggtttt--tttccagGTGTATTTTGAGTCTGATGAAGTTCATGCATGTATTGTGACATGTGGTGGTTTATGCCCTGGCCTCAACACAGTGATTAGGGAAATAGTATGTGGCTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgacatatgtggtaccttatttttgtttatggccttctaaaatttgatattcagGTGTACTTTGAAGCAGATGAAGTTCAGGCTGCTATTGTTACTTGTGGGGGTCTGTGTCCTGGGCTCAACACTGTCATTAGGGAATTAGTGTGTGGCTTAC
                                   ttctaaaatttgatat  TA-rich tract