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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattcattcattcatgcttttacgctttctacaacttttcaaatatcaccttcctcctcatttttaatttttaatgtttctgtctgtgtctgccagAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACCAACATATCGTCATCAGTGTTATCAAGTGATAGTATGCACATTGGA

Basic information

species Glycine max
transcript GLYMA01G00510.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G00510.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os08g40900.2 (Oryza sativa), 3'ss of exon 6
gtatattcattcattca------tgcttttacgctttctacaacttttcaaa-tatcacc-ttcctcctcatttttaat----ttttaatgtttctgtctgtgtctgccagAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACCAACATATCGTCATCAGTGTTATCAAGTGATAGTATGCACATTGGA
||| | | |||    ||      || |||| |    ||   | |  || ||| | |  |  |  |   ||| | || |     |  |||  |||||   |         || |||| ||| |||||||| || ||||| ||||||||||| || |||||||| || ||| | || ||||| || ||||| |||||||||||||| ||||||
gtacactgattatgccaataaactgttttttctgcctcgctatcgcttgaaaatgttgctgtaacaaatcaatcttgagggagtactaaactttcttcattccgaccatagGGATGCAAAACAGCAGCTCCTCTTGGGGATCAGACGAGCAAATAGGCAACCTACGAACCTCTCATCATCTGTCTTATCTAGTGATAGTATGCATATTGGA

upper sequence: GLYMA01G00510.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G102845_T01 (Zea mays), 3'ss of exon 7
----------------------------------gtatattcattcattcatgcttttacgctttctacaacttttc----aaatatcaccttcctcctcatttttaattt--ttaatgtttctgtctgtgtc--tgccagAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACCAACATATCGTCATCAGTGTTATCAAGTGATAGTATGCACATTGGA
                                   | | || || | |||  |  |  |   | |   ||||||  |    ||| |          |   | ||| ||| |  |  ||||||  |    |     |   || || |||| |||||| |||||  |||| |||||||| |||| | |||||||||| || ||||| || |||||  | |||||||| ||||||||||| || 
gtaactttcatgatttttttcctcttgcaaaagcttgtcttgatcctttctagagtaaagattcttaccaacttacctgtgaaacaatgaacaaaactggagtttaaatatcatctatgttttggctcatcatgtttttagGGACGAAAGGCAGCAACTTCTACTGGGAATCAGACGGGCTAGCCGGCAACCCACTAATATATCTTCTTCAGTACTTTCAAGTGACAGTATGCACATAGGG

upper sequence: GLYMA01G00510.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0065g00310.t01 (Vitis vinifera), 3'ss of exon 7
-----------------------------------------------------------------------------------------------gtata-ttcattcattcatgcttttacgctttctacaacttttcaaatatcaccttcctcctcatttttaatttttaatgtttctgtctgtgtctgc-cagAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACCAACATATCGTCATCAGTGTTATCAAGTGATAGTATGCACATTGGA
                                                                                                |  | ||||   | || |||||||    ||   ||   ||||   |||    |    ||||  | | | |  |  | |  |      ||| | ||  ||| |||||||||||||||||||| ||||| || || || ||||||||||||||||||||  |||| |||||||| || ||||||||||||||||||||||| 
gtaatgatcttgagtttggctcctcgaagtattctattctggatcgcaaatatttacaatgaggttaatgctaaatttcttatcttgataaagctttgcacttcacataatcttgcttttctagttga-actcgtttttgtatagaggcagagtcctt-tgtatgaactgcagtaatctataatgtttgtgagcagGGATGAAAAGCAGCAGCTTCTCTTGGGCATTAGGCGGGCTAACAGGCAACCCACCAATTTATCATCATCAGTTTTGTCAAGTGATAGTATGCACATTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatcaccttcctcctcatttttaatttttaatgtttctgtctgtgtctgccagAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACCAACATATCGTCATCAGTGTTATCAAGTGATAGTATGCACATTGGA
                           ttttaat  putative branch site (score: 3)
                tcatttttaattttta  TA-rich tract