1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctctagtcgctcttttgtcttcgaatttatatgtcgtttactacaatgtgctaccaagtaactttgggaaatcttatcctttatggtaatcttgttttagATTGTTGAAATGAGTACTATCCATGGACCAAATTGCATTGCTATCTCTATTGAAGCCAAGAAACATCTTTTATCGGCAGTCCAGGAGGCCATGAACCTGC
species | Glycine max |
transcript | GLYMA01G00420.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCTTCTGGAAGGAAAATTATTTAATACTATAATCCCGTGGCTGCAGCAG ATTGTTGAAATGAGTACTATCCATGGACCAAATTGCATTGCTATCTCTATT
genomic: ATCTTCTGGAAGGAAAATTATTTAATACTATAATCCCGTGGCTGCAGCAGgcaagttcac ... cttgttttagATTGTTGAAATGAGTACTATCCATGGACCAAATTGCATTGCTATCTCTATT
atgtgctaccaagtaactttgggaaatcttatcctttatggtaatcttgttttagATTGTTGAAATGAGTACTATCCATGGACCAAATTGCATTGCTATCTCTATTGAAGCCAAGAAACATCTTTTATCGGCAGTCCAGGAGGCCATGAACCTGC
aagtaac putative branch site (score: 2)
tcttgtttt putative PPT
aaatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctagtcgctcttttgtcttcgaatttatatgtcgtttactacaatgtgctaccaagtaactttgggaaatcttatcctttatggtaatcttgttttagATTGTTGAAATGAGTACTATCCATGGACCAAATTGCATTGCTATCTCTATTGAAGCCAAGAAACATCTTTTATCGGCAGTCCAGGAGGCCATGAACCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - tgctacc