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gtgactttggctttcacccacattgttttagttcagcattattactggatattgttaggaatcaatagttgattatattattatatcaagtgaaaggaaaagtagatggaaaaatggatcttcacaacaattttctaatatgaacttacaaattgaactgatgattgcagGGATAGAGTTAATACTTAGCACAGAAATAGTAAAGGTGGACCTTGCGGCAAAATCTCTGATCAGTGCGGGAGGAGAAACATTCAGTTATCAGATTTTGAT
species | Glycine max |
transcript | GLYMA0169S00210.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTGGAAGTGGAGGGGAAAGGTTGCTTCCTGAGTGGTACGCAAAGAAAG GGATAGAGTTAATACTTAGCACAGAAATAGTAAAGGTGGACCTTGCGGCAAEST: gi|151396143|gb|EV266020.1|EV266020
genomic: TGTTGGAAGTGGAGGGGAAAGGTTGCTTCCTGAGTGGTACACAGAGAAAGgtgactttgg ... atgattgcagGGATAGAGTTAATACTTAGCACAGAAATAGTAAAGGTGGACCTTGCGGCAA
EST: TGTTGGAAGTGGAGGGGAAAGGTTGCTTCCTGAGTGGTACACAGAGAAAG GGATAGAGTTAATACTTAGCACAGAAATAGTAAAGGTGGACCTTGCGGCAAEST: gi|308098764|gb|HO760505.1|HO760505
genomic: TGTTGGAAGTGGAGGGGAAAGGTTGCTTCCTGAGTGGTACACAGAGAAAGgtgactttgg ... atgattgcagGGATAGAGTTAATACTTAGCACAGAAATAGTAAAGGTGGACCTTGCGGCAA
EST: ACACAGAGAAAG GGATAGAGTTAATACTTAGCACAGAAATAGTAAAGGTGGACCTTGCGGCAAEST: gi|192296978|gb|FG990294.1|FG990294
genomic: ACACAGAGAAAGgtgactttgg ... atgattgcagGGATAGAGTTAATACTTAGCACAGAAATAGTAAAGGTGGACCTTGCGGCAA
EST: TGTTGGAAGTGGAGGGGAAAGGTTGCTTCCTGAGTGGTACACAGAGAAAG GGATAGAGTTAATACTTAGCACAGAAATAGTAAAGGTGGACCTTGCGGCAAEST: gi|213607100|gb|DB965070.1|DB965070
genomic: TGTTGGAAGTGGAGGGGAAAGGTTGCTTCCTGAGTGGTACACAGAGAAAGgtgactttgg ... atgattgcagGGATAGAGTTAATACTTAGCACAGAAATAGTAAAGGTGGACCTTGCGGCAA
EST: TGTTGGAAGTGGAGGGGAAAGGTTGCTTCCTGAGTGGTACGCAGAGAAAG GGATAGAGTTAATACTTAGCACAGAAATAGTAAAGGTGGACCTTGCGGCAAEST: gi|213605771|gb|DB968603.1|DB968603
genomic: TGTTGGAAGTGGAGGGGAAAGGTTGCTTCCTGAGTGGTACACAGAGAAAGgtgactttgg ... atgattgcagGGATAGAGTTAATACTTAGCACAGAAATAGTAAAGGTGGACCTTGCGGCAA
EST: TGTTGGAAGTGGAGGGGAAAGGTTGCTTCCTGAGTGGTACGCAGAGAAAG GGATAGAGTTAATACTTAGCACAGAAATAGTAAAGGTGGACCTTGCGGCAA
genomic: TGTTGGAAGTGGAGGGGAAAGGTTGCTTCCTGAGTGGTACACAGAGAAAGgtgactttgg ... atgattgcagGGATAGAGTTAATACTTAGCACAGAAATAGTAAAGGTGGACCTTGCGGCAA
ggatcttcacaacaattttctaatatgaacttacaaattgaactgatgattgcagGGATAGAGTTAATACTTAGCACAGAAATAGTAAAGGTGGACCTTGCGGCAAAATCTCTGATCAGTGCGGGAGGAGAAACATTCAGTTATCAGATTTTGAT
aacaattttctaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgactttggctttcacccacattgttttagttcagcattattactggatattgttaggaatcaatagttgattatattattatatcaagtgaaaggaaaagtagatggaaaaatggatcttcacaacaattttctaatatgaacttacaaattgaactgatgattgcagGGATAGAGTTAATACTTAGCACAGAAATAGTAAAGGTGGACCTTGCGGCAAAATCTCTGATCAGTGCGGGAGGAGAAACATTCAGTTATCAGATTTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA