Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   		32  
 5'  3'   		33  
 5'  3'   		34  
 5'  3'   		35  
 5'  3'   		36  
 5'  3'   		37  
 5'  3'   		38  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatcaagagttcttttttttcagtgatttcacagtccctagattttgttgaagtgggtttcttgatcttgaggtatatacaaacatccaagttggtccaacatatttgtctggtactgctactgttgccagGTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGGTGCAGTTTTATCCTTGAATCCCATGCAAACACTAAATTTGGGACCATCT

Basic information

species Glycine max
transcript GLYMA06G07850.1
intron # 38
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51341990|gb|CO983307.1|CO983307
EST:     TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATT                         GTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
genomic: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATTgtaagaatca ... ctgttgccagGTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
EST: gi|151412851|gb|EV282663.1|EV282663
EST:     TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATT                         GTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
genomic: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATTgtaagaatca ... ctgttgccagGTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
EST: gi|208333696|gb|GE131123.1|GE131123
EST:     GAAGTGGAAAGAACCAAAAGCAATGGGGAANCAAGTATTAATT                         GTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
genomic: GAAGTGGAAAGAACC-AAAGCAAT-GGGAATCAAGTATTAATTgtaagaatca ... ctgttgccagGTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
EST: gi|15814728|gb|BI787003.1|BI787003
EST:     TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATT                         GTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
genomic: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATTgtaagaatca ... ctgttgccagGTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
EST: gi|13240266|gb|BG359575.1|BG359575
EST:     TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATT                         GTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
genomic: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATTgtaagaatca ... ctgttgccagGTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
EST: gi|26056164|gb|CA799078.1|CA799078
EST:     TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATT                         GTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
genomic: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATTgtaagaatca ... ctgttgccagGTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
EST: gi|51338571|gb|CO982437.1|CO982437
EST:     TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATT                         GTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG
genomic: TTCCGAAGAGAAGTGGAAAGAACCAAAGCAATGGGAATCAAGTATTAATTgtaagaatca ... ctgttgccagGTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacaaacatccaagttggtccaacatatttgtctggtactgctactgttgccagGTTTGAAAGATTGGTGGAGATAAATCATCACATGCCCTACGCAGAAATTGGTGCAGTTTTATCCTTGAATCCCATGCAAACACTAAATTTGGGACCATCT
                      aacatattt  TA-rich tract