1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' |
...aattaccgcgtgctagttgctcttaatatttatacctgagcttttgcattttggcaacaacaaatcatatctcattgttattcctttttccatcttacagTTGGCCCCTTGCTATAGTCGGAAAATTTATTCCAGTTCCCAAAACACCATTGGCTCGTTACTTCTTGAAGCCACTCAGGCGATTGAAGAGGTCTAGGTCT
species | Glycine max |
transcript | GLYMA08G23760.1 |
intron # | 34 |
splice site | 3' |
intron type | U2 |
EST: AGGCTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGATTTGTCAG TTGGCCCCTTGCTATAGTCGGAAAATTTATTCCAGTTCCCAAAACACCATTEST: gi|19053417|gb|BM732084.1|BM732084
genomic: AGGCTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGATTTGTCAGgtgagttcac ... catcttacagTTGGCCCCTTGCTATAGTCGGAAAATTTATTCCAGTTCCCAAAACACCATT
EST: AGGCTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGATTTGTCAG TTGGCCCCTTGCTATAGTCGGAAAATTCATTCCAGTTCCCAAAACACCATTEST: gi|254314439|gb|GR832024.1|GR832024
genomic: AGGCTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGATTTGTCAGgtgagttcac ... catcttacagTTGGCCCCTTGCTATAGTCGGAAAATTTATTCCAGTTCCCAAAACACCATT
EST: AGGCTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGATTTGTCAG TTGGCCCCTTGCTATAGTCGGAAAATTTATTCCAGTTCCCAAAACACCATTEST: gi|6071595|gb|AW100982.1|AW100982
genomic: AGGCTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGATTTGTCAGgtgagttcac ... catcttacagTTGGCCCCTTGCTATAGTCGGAAAATTTATTCCAGTTCCCAAAACACCATT
EST: AGGCTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGATTTGTCAG TTGGCCCCTTGCTATAGTCGGAAAATTTATTCCAGTTCCCAAAACACCATTEST: gi|207715867|gb|GD699315.1|GD699315
genomic: AGGCTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGATTTGTCAGgtgagttcac ... catcttacagTTGGCCCCTTGCTATAGTCGGAAAATTTATTCCAGTTCCCAAAACACCATT
EST: AGGCTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGATTTGTCAG TTGGCCCCTTGCTATAGTCGGAAAATTTATTCCAGTTCCCAAAACACCATT
genomic: AGGCTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGATTTGTCAGgtgagttcac ... catcttacagTTGGCCCCTTGCTATAGTCGGAAAATTTATTCCAGTTCCCAAAACACCATT
gcattttggcaacaacaaatcatatctcattgttattcctttttccatcttacagTTGGCCCCTTGCTATAGTCGGAAAATTTATTCCAGTTCCCAAAACACCATTGGCTCGTTACTTCTTGAAGCCACTCAGGCGATTGAAGAGGTCTAGGTCT
tctcattgttattcct CT-rich tract
aaatcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattaccgcgtgctagttgctcttaatatttatacctgagcttttgcattttggcaacaacaaatcatatctcattgttattcctttttccatcttacagTTGGCCCCTTGCTATAGTCGGAAAATTTATTCCAGTTCCCAAAACACCATTGGCTCGTTACTTCTTGAAGCCACTCAGGCGATTGAAGAGGTCTAGGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - cgcgtgc
- - - - - - - -gttgctc
- - - - - - - - - - - - - - - -atacctg
- - - - - - - - - - - - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - caacaac