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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctccttaactgagtcacatttccataatgatagtggtaacatttaattatttttttaccaataaaagttggcagacttgacttggtgtatattgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGACATAGAAAATAAAAAATCTACGGATGGTCGCAGTCAAGGAGATTTGTTTG

Basic information

species Glycine max
transcript GLYMA16G30190.2
intron # 32
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22521685|gb|BU080496.1|BU080496
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|37997604|gb|CF809193.1|CF809193
EST:     AGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: AGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|7639380|gb|AW733704.1|AW733704
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|254334422|gb|GR844207.1|GR844207
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|13480151|gb|BG509494.1|BG509494
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|9984540|gb|BE658648.1|BE658648
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTNNCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|17963909|gb|BM270652.1|BM270652
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|18720655|gb|BM523266.1|BM523266
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|15662580|gb|BI699959.1|BI699959
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|14999959|gb|BI320773.1|BI320773
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
EST: gi|31461631|gb|CD403659.1|CD403659
EST:     ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAG                         GACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC
genomic: ATGCACTGTACCAAAAGGGGCTTGCGCTGGCAGAGATTGAGTCTTTAAAGgtttgagctt ... attgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatttttttaccaataaaagttggcagacttgacttggtgtatattgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGACATAGAAAATAAAAAATCTACGGATGGTCGCAGTCAAGGAGATTTGTTTG
                             acttgac  putative branch site (score: 4)
     ttttttaccaataaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctccttaactgagtcacatttccataatgatagtggtaacatttaattatttttttaccaataaaagttggcagacttgacttggtgtatattgtcaaagGACGTAGATAAGTCCCCGACTTTGGCTGCCACAGAAGGGGCAAAAGAAGACATAGAAAATAAAAAATCTACGGATGGTCGCAGTCAAGGAGATTTGTTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- ccttaac
- - - - - - - - - - - - - - gatagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttggtg