1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' |
...taaaattaccgcgtactagttgctcttaatttttataccggagcttttgcattttggcaacaaatcatatctcatagttattgcttttgccatcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATTGGCTCGTTACTTCTTGAAACCACTCAGGCGATTGAAGAGGTCTAGGTCT
species | Glycine max |
transcript | GLYMA07G00630.2 |
intron # | 31 |
splice site | 3' |
intron type | U2 |
EST: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAG CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATTEST: gi|214006313|gb|DB990236.1|DB990236
genomic: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
EST: GACTTGATTGGAAGCTATGGCTTGC-TATGCTTGGTATTGGCCTTTTCAG CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATTEST: gi|208232958|gb|GE035427.1|GE035427
genomic: GACTTGATTGGAAGCTATGGCTTGCTTCT-CTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
EST: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAG CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATTEST: gi|31312382|gb|CD397585.1|CD397585
genomic: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
EST: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAG CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATTEST: gi|10236770|gb|BE805658.1|BE805658
genomic: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
EST: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAG CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATTEST: gi|151393639|gb|EV263514.1|EV263514
genomic: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
EST: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAG CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATTEST: gi|213594551|gb|DB975425.1|DB975425
genomic: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
EST: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAG CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATTEST: gi|31468220|gb|CD410248.1|CD410248
genomic: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
EST: GGCTTGCTTCTCTTGGTATTGGCCTTGTCAG CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATTEST: gi|13791738|gb|BG654329.1|BG654329
genomic: GGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
EST: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATAGGCCTTGTCAG CTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
genomic: AGACTTGATTGGAAGCTATGGCTTGCTTCTCTTGGTATTGGCCTTGTCAGgttagttcac ... catcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATT
tttgcattttggcaacaaatcatatctcatagttattgcttttgccatcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATTGGCTCGTTACTTCTTGAAACCACTCAGGCGATTGAAGAGGTCTAGGTCT
cttttgcc CT-rich tract
aaatcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaattaccgcgtactagttgctcttaatttttataccggagcttttgcattttggcaacaaatcatatctcatagttattgcttttgccatcttacagCTGGCCCCTTGCTATAGTCGGCAAATTCATTCCAGTTCCCAAAACACCATTGGCTCGTTACTTCTTGAAACCACTCAGGCGATTGAAGAGGTCTAGGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - gttgctc
- - - - - - - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaatc