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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtttgagtcctaacagatttatatgaaaagtttatcctatagaagtttgtactagtttggtgtcgataaaactatgaatatcatgattgcaatttgcagGTGGTTGGTGCAGCCGGTGAGGTGATTAACAGTATTGACAGAGAAGAGCTAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAG

Basic information

species Glycine max
transcript GLYMA16G30190.2
intron # 30
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20813165|gb|BQ297643.1|BQ297643
EST:     ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
genomic: ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
EST: gi|9204949|gb|BE331173.1|BE331173
EST:     ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
genomic: ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
EST: gi|13480151|gb|BG509494.1|BG509494
EST:     GTTTCTTGGAGTAATATCAAAGACAAAATCCATCATGATGAAGAG                         GTGGTTGGTGCAGCCGGTGAGGTGATTAACAGTATTGACAGAGAAGAGCTA
genomic: GTTTCTTGGAGTAATATCAAAGACAAAATCCATCATGATGAAGAGgtacattttt ... caatttgcagGTGGTTGGTGCAGCCGGTGAGGTGATTAACAGTATTGACAGAGAAGAGCTA
EST: gi|7233777|gb|AW569120.1|AW569120
EST:     ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
genomic: ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
EST: gi|18720655|gb|BM523266.1|BM523266
EST:     ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
genomic: ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
EST: gi|15662580|gb|BI699959.1|BI699959
EST:     CAAAGACAAAATCCATCATGATGAAGAG                         GTGGTTGGTGCAGCCGGTGAGGTGATTAACAGTATTGACAGAGAAGAGCTA
genomic: CAAAGACAAAATCCATCATGATGAAGAGgtacattttt ... caatttgcagGTGGTTGGTGCAGCCGGTGAGGTGATTAACAGTATTGACAGAGAAGAGCTA
EST: gi|14126584|gb|BG791022.1|BG791022
EST:     ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
genomic: ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
EST: gi|7146673|gb|AW508595.1|AW508595
EST:     ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
genomic: ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
EST: gi|7691707|gb|AW759830.1|AW759830
EST:     ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
genomic: ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
EST: gi|14999959|gb|BI320773.1|BI320773
EST:     GTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
genomic: GTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
EST: gi|19348791|gb|BM893323.1|BM893323
EST:     ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
genomic: ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
EST: gi|10233815|gb|BE802703.1|BE802703
EST:     ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA
genomic: ATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgtactagtttggtgtcgataaaactatgaatatcatgattgcaatttgcagGTGGTTGGTGCAGCCGGTGAGGTGATTAACAGTATTGACAGAGAAGAGCTAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAG
                     ataaaactatgaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtttgagtcctaacagatttatatgaaaagtttatcctatagaagtttgtactagtttggtgtcgataaaactatgaatatcatgattgcaatttgcagGTGGTTGGTGCAGCCGGTGAGGTGATTAACAGTATTGACAGAGAAGAGCTAGCAAAATTTTTTGCTCTAAAAAATGATCCAGAAGATGAGGAAGCGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - -cctaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgatt