Sequence
atgc intronic sequence ATGC exonic sequencegtaaatcttttctcttgaaagaaattattaccttagtgttttcatgcttatccttttttgtgtgtgtgcagTGTTTTCACTCCTTATTATTCTGAGATTGTGCTTTATAGCATGGCTGAACTCCTAAAGAAAAACGAAGACGGCATTTCAATTTTGTTCTACCTTCAGAAG
Basic information
species | Glycine max |
transcript | GLYMA10G44150.2 |
intron # | 30 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G44150.2 (Glycine max), 3'ss of exon 30
lower sequence: GRMZM2G442324_T01 (Zea mays), 3'ss of exon 25
-------------------------------------------------------------------------------------gtaaatcttttctcttgaaagaaattattaccttagtgttttcatgct-----tatccttttttgtgtgtgtgcagTGTTTTCACTCCTTATTATTCTGAGATTGTGCTTTATAGCATGGCTGAACTCCTAAAGAAAAACGAAGACGGCATTTCAATTTTGTTCTACCTTCAGAAG
|| || ||| | || | | | | || | ||||| | | | || | ||| | | |||||||| || ||||| ||||| ||||||||||| || || |||||||||||||| | ||||||||||||||||| || | | |||| || || ||||||
gtggggctcctttagtctatttgcttgttcattttgttgtggacttgccacttctcttttggttgcaatttgattattttgttctgtgcatttttcccctggtttggctgttcaattatactattttcttacattctgtgtcttcattttttgttatgcagTGTGTTTACTCCATATTACTCTGAGATTGTTCTCTACAGCATGGCTGAACTTCAGAAGAAAAACGAAGACGGTATAACTACACTGTTTTATCTCCAGAAG
upper sequence: GLYMA10G44150.2 (Glycine max), 3'ss of exon 30
lower sequence: AT3G07160.1 (Arabidopsis thaliana), 3'ss of exon 30
gtaaatcttttctcttgaaagaaat-tattaccttagtg---ttttcatgc----ttatccttttttgtgtg--tgtgcagTGTTTTCACTCCTTATTATTCTGAGATTGTGCTTTATAGCATGGCTGAACTCCTAAAGAAAAACGAAGACGGCATTTCAATTTTGTTCTACCTTCAGAAG
||| ||||| | | ||||| || || | |||| |||| | ||||| | | | |||||| |||||||| || ||||| ||| ||||||| || ||||||||||||||| |||| ||| || || || || ||||| |||| || ||||||||
gtatttctttctccatactttcgtcatattatctaagcaagctcttcacaagttactatcttcttttggattatttttcagTGTCTTCACTCCATACTATTCCGAGGTTGTGCTATACAGCATGGCTGAACTCACCAAGAGAAATGAGGATGGAATATCAATACTGTTTTATCTTCAGAAA
upper sequence: GLYMA10G44150.2 (Glycine max), 3'ss of exon 30
lower sequence: Vv06s0004g01200.t01 (Vitis vinifera), 3'ss of exon 27
-------------------gtaaatcttttctcttgaaagaaattattaccttagtgtttt--------catgctta--tccttttttgtgtgtgtgcagTGTTTTCACTCCTTATTATTCTGAGATTGTGCTTTATAGCATGGCTGAACTCCTAAAGAAAAACGAAGACGGCATTTCAATTTTGTTCTACCTTCAGAAG
|| | | || | || || || ||| ||||| || | | ||| || | || || | ||| | ||| |||||| |||||||| ||||||||||||| |||||||||||| |||| |||||||| ||||||||| || || || || |||| ||||| ||||| |||||
gtagtataattctctcgattcaattttcttgtatttaatgatattgatacctaagcttataaaatatagcatcctcagttctttctatgtttctgtacagTGTGTTCACTCCATATTATTCTGAGACTGTGCTTTATAGTATGGATGAACTCCAAAAGAAAAATGAGGATGGAATATCAACATTGTTTTACCTCCAGAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaagaaattattaccttagtgttttcatgcttatccttttttgtgtgtgtgcagTGTTTTCACTCCTTATTATTCTGAGATTGTGCTTTATAGCATGGCTGAACTCCTAAAGAAAAACGAAGACGGCATTTCAATTTTGTTCTACCTTCAGAAG
aaattattacctta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatcttttctcttgaaagaaattattaccttagtgttttcatgcttatccttttttgtgtgtgtgcagTGTTTTCACTCCTTATTATTCTGAGATTGTGCTTTATAGCATGGCTGAACTCCTAAAGAAAAACGAAGACGGCATTTCAATTTTGTTCTACCTTCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA