Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcactccatgaacttgttgaaaattaacaatttataaattataatagtgaagccttaatgctttggtgttatgaattaactaaatatttatttgatttttcagTACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTCGATACTGTTTCTTGTATAGAAAAG

Basic information

species Glycine max
transcript GLYMA01G39430.1
intron # 30
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39430.1 (Glycine max), 3'ss of exon 30
lower sequence: AT5G67100.1 (Arabidopsis thaliana), 3'ss of exon 28
gtttcactccatgaacttgttgaaaattaacaatttataaattataatagtgaagccttaatgctttggtgt---tatgaattaactaaatatttatttgatttttcagTACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTCGATACTGTTTCTTGTATAGAAAAG
                                   |||| |  || ||     | |||||   ||    | |   |||   || ||  | ||  |  |||| ||| |||||||| |||||||||||||||||||| || || || || |||||  | || || ||    |  | | ||||||||
----------------------------------gtatataccatcatc----aaccttataactcctatctctctattgcttcacagactaact-cttgactttacagTACACTGAAGCAGACTTGTACAAGCAACTGTCATACTTCTGCCACATCTTAGACACACAATGCTCTTTAGAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193709895|gb|FK642145.1|FK642145
EST:     GAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAG                         TACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTC
genomic: GAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAGgtttcactcc ... gatttttcagTACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTC
EST: gi|193677647|gb|FK614905.1|FK614905
EST:     GAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAG                         TACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTC
genomic: GAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAGgtttcactcc ... gatttttcagTACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTC
EST: gi|207800080|gb|GD768337.1|GD768337
EST:     GAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAG                         TACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTC
genomic: GAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAGgtttcactcc ... gatttttcagTACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTC
EST: gi|19269740|gb|BM885996.1|BM885996
EST:     GAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAG                         TACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTC
genomic: GAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAGgtttcactcc ... gatttttcagTACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagccttaatgctttggtgttatgaattaactaaatatttatttgatttttcagTACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTCGATACTGTTTCTTGTATAGAAAAG
                                               tttttc  CT-rich tract
                  tgttatgaattaacta  TA-rich tract