1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagccttttagccattccagttgtatctggaccatctgacgtttactagttggctaagaattaattttctgacataagtaaaaccaatgccttcttttgatgttattttaacttatatctgtctactcatctagagatttgtaaaatttttagGATGACAAAAATGTTGCACATTTGACTCATGTGAGTGAAATGGAAAAGAAGATTGAGACATTGGCAAGGATTACTACTATACTCAAAGATGTTATTCAGA
species | Glycine max |
transcript | GLYMA20G28950.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGTCCAAAGAAAAATTGCAGATTTGCAAGTTGAACTTCAAGGTCGAAAG GATGACAAAAATGTTGCACATTTGACTCATGTGAGTGGAATGGAAAAGAAGEST: gi|13480887|gb|BG510230.1|BG510230
genomic: CTGTCCAAAGAAAAATTGCAGATTTGCAAGTTGAACTTCAAGGTCGAAAGgttagccttt ... aaatttttagGATGACAAAAATGTTGCACATTTGACTCATGTGAGTGAAATGGAAAAGAAG
EST: CTGTCCAAAGAAAAATTGCAGATTTGCAAGTTGAACTTCAAGGTCGAAAG GATGACAAAAATGTTGCACATTTGACTCATGTGAGTGAAATGGAAAAGAAGEST: gi|207709891|gb|GD690575.1|GD690575
genomic: CTGTCCAAAGAAAAATTGCAGATTTGCAAGTTGAACTTCAAGGTCGAAAGgttagccttt ... aaatttttagGATGACAAAAATGTTGCACATTTGACTCATGTGAGTGAAATGGAAAAGAAG
EST: CTGTCCAAAGAAAAATTGCAGATTTGCAAGTTGAACTTCAAGGTCGAAAG GATGACAAAAATGTTGCACAEST: gi|192322441|gb|FK014922.1|FK014922
genomic: CTGTCCAAAGAAAAATTGCAGATTTGCAAGTTGAACTTCAAGGTCGAAAGgttagccttt ... aaatttttagGATGACAAAAATGTTGCACA
EST: CTGTCCAAAGAAAAATTGCAGATTTGCAAGTTGAACTTCAAGGTCGAAAG GATGACAAAAATGTTGCACATTTGACTCATGTGAGTGAAATGGAAAAGAAG
genomic: CTGTCCAAAGAAAAATTGCAGATTTGCAAGTTGAACTTCAAGGTCGAAAGgttagccttt ... aaatttttagGATGACAAAAATGTTGCACATTTGACTCATGTGAGTGAAATGGAAAAGAAG
gatgttattttaacttatatctgtctactcatctagagatttgtaaaatttttagGATGACAAAAATGTTGCACATTTGACTCATGTGAGTGAAATGGAAAAGAAGATTGAGACATTGGCAAGGATTACTACTATACTCAAAGATGTTATTCAGA
ttttaac putative branch site (score: 2)
ttttt putative PPT
tagagatttgtaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagccttttagccattccagttgtatctggaccatctgacgtttactagttggctaagaattaattttctgacataagtaaaaccaatgccttcttttgatgttattttaacttatatctgtctactcatctagagatttgtaaaatttttagGATGACAAAAATGTTGCACATTTGACTCATGTGAGTGAAATGGAAAAGAAGATTGAGACATTGGCAAGGATTACTACTATACTCAAAGATGTTATTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG