1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttattctgtctgcaacttctaatgtggtttaataatttcatttaaacaatttaactttcagaatgtgctttactttcaatatttgtttcatatgtgcagGGGACTGAAATGCATCAATGGTAGAGACGTTTGTTGCTTCATGATCTCCTGTAAAAACTCCATCAACATTGATACAGTTATTGATTGGCTTGTAAAACAT
species | Glycine max |
transcript | GLYMA20G27070.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGATTGACAAACCTGGGGCATTGTCTAAGCAAGACCTGACAGAGCAGAT GGGACTGAAATGCATCAATGGTAGAGACGTTTGTTGCTTCATGATCTCCTG
genomic: AAGATTGACAAACCTGGGGCATTGTCTAAGCAAGACCTGACAGAGCAGATgtaagtatca ... atatgtgcagGGGACTGAAATGCATCAATGGTAGAGACGTTTGTTGCTTCATGATCTCCTG
aacaatttaactttcagaatgtgctttactttcaatatttgtttcatatgtgcagGGGACTGAAATGCATCAATGGTAGAGACGTTTGTTGCTTCATGATCTCCTGTAAAAACTCCATCAACATTGATACAGTTATTGATTGGCTTGTAAAACAT
atttaac putative branch site (score: 3)
tttactttcaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattctgtctgcaacttctaatgtggtttaataatttcatttaaacaatttaactttcagaatgtgctttactttcaatatttgtttcatatgtgcagGGGACTGAAATGCATCAATGGTAGAGACGTTTGTTGCTTCATGATCTCCTGTAAAAACTCCATCAACATTGATACAGTTATTGATTGGCTTGTAAAACAT
- - - - - ctgcaac
- - - - - - - - - - - -tgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgtg