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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctcaccacatatatccttgctactatctaactggttgtgatgttataaaatcaaagttgcctatctataatctaattattgattgtggagttgattttgcaaagcacccaaattttatcacagcatatttgactgttcaaaagtgctcttaattttaatcattgtgacagGAAAGCATTTCATCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGTCTATCTGGCATGGGAAAAAATGATGCTTCAAAATACAGCATGAGTGTTA

Basic information

species Glycine max
transcript GLYMA20G26950.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G26950.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0091g00700.t01 (Vitis vinifera), 3'ss of exon 2
gtctcaccacatatatccttgctactatctaactggttgtgatgttataaaatcaaagttgcctatctataatctaattattgattgtggagttgattttgcaaagcacccaaattttatcacagcatatttgactgttcaaaagtgctcttaatttt-aatcattgt-gacagGAAAGCATTTCATCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGTCTATCTGGCATGGGAAAAAATGATGCTTCAAAATACAGCATGAGTGTTA
                                                                   | |    |||| ||||| |  | |    ||       || || ||  | ||||  |||   ||||          | |   ||||| | || ||| | |||  |||||||||||| ||||||||   |||||||||||||||||| || |||||||||||||| ||  ||    | |  | | |||||||||| || |||||||| |
------------------------------------------------------------------tttttgcttaataattgacttggaaaaaaat-------agaactcac-tgttatatcagtggattttgtatccaggagggattcttattcttcaataactgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGTCTATCAGGAGTGAATGACAGGGGTCCTTCAAAATATAGTATGAGTGTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193699437|gb|FK639836.1|FK639836
EST:     TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAG                         GAAAGCATTTCATCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT
genomic: TCATGACAGAAGATAATCCTATCCGTCAGCAATCTGAAAGAGTTACAGAGgtctcaccac ... attgtgacagGAAAGCATTTCATCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcacagcatatttgactgttcaaaagtgctcttaattttaatcattgtgacagGAAAGCATTTCATCTGCCAAGAATTATATGGATAATGGTGGAATGTGGAGTCTATCTGGCATGGGAAAAAATGATGCTTCAAAATACAGCATGAGTGTTA
                                     ttttaat  putative branch site (score: 3)
                               tcttaattttaatcat  TA-rich tract