1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttgctaaaacgtgaaattctgaaggttaataaacgcatgtgcatgaatatttagttgagaaattggtgaattggtgttaatgtgcttcattgctagcagGTTTGTTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAAATGCAGTTGGCCGGCCTCGCCCAGACTTCTATTGGCGTTGCTTCCCCGA
species | Glycine max |
transcript | GLYMA20G25640.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTCTATATGCGCAGGAGAGATGTTTATGATTTGCACCACAGTGTTCTAG GTTTGTTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAAEST: gi|151400943|gb|EV270757.1|EV270757
genomic: CTTCTATATGCGCAGGAGAGATGTTTATGATTTGCACCACAGTGTTCTAGgtaacatttt ... ttgctagcagGTTTGTTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAA
EST: CTTCTATATGCGCAGGAGAGATGTTTATGATTTGCACCACAGTGTTCTAG GTTTGTTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAA
genomic: CTTCTATATGCGCAGGAGAGATGTTTATGATTTGCACCACAGTGTTCTAGgtaacatttt ... ttgctagcagGTTTGTTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAA
gaatatttagttgagaaattggtgaattggtgttaatgtgcttcattgctagcagGTTTGTTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAAATGCAGTTGGCCGGCCTCGCCCAGACTTCTATTGGCGTTGCTTCCCCGA
tgttaat putative branch site (score: 3)
cttcatt putative PPT
tttagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgctaaaacgtgaaattctgaaggttaataaacgcatgtgcatgaatatttagttgagaaattggtgaattggtgttaatgtgcttcattgctagcagGTTTGTTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAAATGCAGTTGGCCGGCCTCGCCCAGACTTCTATTGGCGTTGCTTCCCCGA
cttgcta
- - - - - - - - - - - - - - - - - cgcatgt
- - - - - - - - - - - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttca