1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttagtgatgatttctgggactttgaagtcttgatttgagagatgttgtggctcattgtgtggcaatttgaacgttttatctgggggttcaactttgccctttatttccagGGTGCTATCATGGCTGTTGGCGCATCAAAGCCTACTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTG
species | Glycine max |
transcript | GLYMA20G24830.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCATACTTCCGCCAGGCCAG GGTGCTATCATGGCTGTTGGCGCATCAAAGCCTACTGTTCTGGCTGATAAAEST: gi|27809157|gb|CB063579.1|CB063579
genomic: CCATACTTCCACCAGGCCAGgttagtgatg ... ttatttccagGGTGCTATCATGGCTGTTGGCGCATCAAAGCCTACTGTTCTGGCTGATAAA
EST: TGGGTATGTTTGGAGTTGACAGGTTTGATGCCATACTTCCACCAGGCCAG GGTGCTATCATGGCTGTTGGCGCATCAAAGCCTACTGTTCTGGCTGATAAAEST: gi|9985549|gb|BE659657.1|BE659657
genomic: TGGGTATGTTTGGAGTTGACAGGTTTGATGCCATACTTCCACCAGGCCAGgttagtgatg ... ttatttccagGGTGCTATCATGGCTGTTGGCGCATCAAAGCCTACTGTTCTGGCTGATAAA
EST: TGGGTATGTTTGGAGTTGACAGGTTTGATGCCATACTTCCACCAGGCCAG GGTGCTATCATGGCTGTTGGCGCATCAAAGCCTACTGTTCTGGCTGATAAA
genomic: TGGGTATGTTTGGAGTTGACAGGTTTGATGCCATACTTCCACCAGGCCAGgttagtgatg ... ttatttccagGGTGCTATCATGGCTGTTGGCGCATCAAAGCCTACTGTTCTGGCTGATAAA
tgtgtggcaatttgaacgttttatctgggggttcaactttgccctttatttccagGGTGCTATCATGGCTGTTGGCGCATCAAAGCCTACTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTG
ctttgccctttatttc CT-rich tract
tttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgatgatttctgggactttgaagtcttgatttgagagatgttgtggctcattgtgtggcaatttgaacgttttatctgggggttcaactttgccctttatttccagGGTGCTATCATGGCTGTTGGCGCATCAAAGCCTACTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG