Sequence
atgc intronic sequence ATGC exonic sequencegtattaaggcttgtctattaaattgcttttatcatttctgttctgggccatttatttgttatcactttgtatttcagAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAG
Basic information
species | Glycine max |
transcript | GLYMA20G23390.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G23390.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G50410.1 (Arabidopsis thaliana), 3'ss of exon 4
gtattaaggcttgtctattaaattgcttttatcatttctgttctgggccatttatttgttatcact-ttgtatttcagAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAG
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gtattcaggtttacatcat------ctttcagtatctgtcagaatggtcttgtgtac-ttaacactgttgtttctcagAAAATTGCATTGGCATGGATGTTTCAGAAGGAAACTAATAGTTTGCACTGTATGGGAGGGATATTAGCTGATGATCAG
upper sequence: GLYMA20G23390.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G20010.1 (Arabidopsis thaliana), 3'ss of exon 3
gtattaaggcttgtctattaaattgcttttatcatttct--gttctgggccatttatttgttatcactttgtatttcagAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAG
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gtagta--gcatgttt-taagtttccatttattggccgttggtattggtttgtgtattaagtactac--tggtcttcagAAAATTGCGTTGGCATGGATGTTTCAGAAGGAAACAAGTAGTTTCAACTGTCCAGGAGGGATACTAGCAGATGATCAG
upper sequence: GLYMA20G23390.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv10s0071g00780.t01 (Vitis vinifera), 3'ss of exon 3
-------------------------------------------------------------------------gtattaa--ggcttgtctattaaattgcttttatcatttctgttctgggccatttatttgttatc-----------actttgtatttcagAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAG
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gttgtttttttttttgttttttttctatttttttattttttttctgcatctactttagttgactttggtttgtatgtgaattacttggtttgagatactgtaattatacttcgaattgtgtgtgaaatacttggttttgaccctaaggtattttgtcgtacagAAAATTGCATTGGCATGGATGCATCAGAAGGAAACAAGAAGTTTACATTGTTTGGGCGGGATTCTAGCTGATGATCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgcttttatcatttctgttctgggccatttatttgttatcactttgtatttcagAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAG
tcacttt CT-rich tract
atttatttgttatca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattaaggcttgtctattaaattgcttttatcatttctgttctgggccatttatttgttatcactttgtatttcagAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT