1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaggtattcagttttccttgtttagatcagttgttgtggtgtaatcttatttttgaaataatctctctatcatgtactgtatctgctgaatcagaacatagcataagaacaggcgctgaattctttatagatatgtgcttgcatctgacatatattgatttttttcccctacagTCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGTATCTTACA
species | Glycine max |
transcript | GLYMA20G22720.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG TCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGEST: gi|16995640|gb|BM085012.1|BM085012
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... tcccctacagTCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTG
EST: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG TCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGEST: gi|213608370|gb|DB963104.1|DB963104
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... tcccctacagTCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTG
EST: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG TCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGEST: gi|298181305|gb|HO022744.1|HO022744
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... tcccctacagTCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTG
EST: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG TCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGEST: gi|23057344|gb|BU578018.1|BU578018
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... tcccctacagTCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTG
EST: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAG TCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTG
genomic: TTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGgtaggtattc ... tcccctacagTCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTG
attctttatagatatgtgcttgcatctgacatatattgatttttttcccctacagTCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGTATCTTACA
tattgat putative branch site (score: 3)
ttgatttttttcccct CT-rich tract
acatatattgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtattcagttttccttgtttagatcagttgttgtggtgtaatcttatttttgaaataatctctctatcatgtactgtatctgctgaatcagaacatagcataagaacaggcgctgaattctttatagatatgtgcttgcatctgacatatattgatttttttcccctacagTCATTGGCTCGGATGAACAAGAAGGACTCATGGCTTTTCTGGTGGACCCTGTATCTTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA