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...ttctacatattctcgttaaccgtctattttagttcttgtggttttttttattatatatgtttattgctttaaaataatttttatctatgttaattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG
species | Glycine max |
transcript | GLYMA20G22600.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTEST: gi|26058927|gb|CA801841.1|CA801841
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTEST: gi|209720625|gb|BW654452.1|BW654452
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTEST: gi|209699787|gb|BW655800.1|BW655800
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTEST: gi|18039891|gb|BM308185.1|BM308185
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTEST: gi|192296530|gb|FG991636.1|FG991636
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTEST: gi|22522553|gb|BU081364.1|BU081364
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTEST: gi|208111645|gb|GD911911.1|GD911911
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTEST: gi|213616715|gb|DB971240.1|DB971240
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTEST: gi|15814184|gb|BI786459.1|BI786459
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTEST: gi|254333709|gb|GR848627.1|GR848627
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTEST: gi|254327042|gb|GR836651.1|GR836651
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
EST: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG ACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
genomic: GACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGgtataccttc ... taattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTT
ttttattatatatgtttattgctttaaaataatttttatctatgttaattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG
tgttaat putative branch site (score: 3)
ttttc CT-rich tract
ttatatatgtttattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctacatattctcgttaaccgtctattttagttcttgtggttttttttattatatatgtttattgctttaaaataatttttatctatgttaattttcagACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG