1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taatattccttaccaaaagtcatgtatatattttttgactcatccaaaactcagcatgacatttgatgtgagccattttgtcatggaatttattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCAT
species | Glycine max |
transcript | GLYMA20G21510.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAEST: gi|298192521|gb|HO036603.1|HO036603
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAEST: gi|192325421|gb|FK018377.1|FK018377
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAEST: gi|209724913|gb|BW669602.1|BW669602
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAEST: gi|254320358|gb|GR831166.1|GR831166
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACA-GATAEST: gi|13791212|gb|BG653803.1|BG653803
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: AGACAAACTTTTGTTGTGGACAAAGACAGCGGGCAAATGAGGCTGCCCAG ATGAGCATTGGAAGGAAGTGEST: gi|298197400|gb|HO044879.1|HO044879
genomic: GGACAAACTTTCGTTGTGGACAAAGACAGCGG-CAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTG
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAEST: gi|192310625|gb|FG999592.1|FG999592
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAEST: gi|120532041|gb|EH260174.1|EH260174
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAEST: gi|209700394|gb|BW664407.1|BW664407
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAEST: gi|192310624|gb|FG999591.1|FG999591
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAEST: gi|7692491|gb|AW760596.1|AW760596
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAEST: gi|120533215|gb|EH261348.1|EH261348
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAEST: gi|23733803|gb|BU765115.1|BU765115
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
EST: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAG ATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
genomic: AGGACAAACTTTCGTTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGgtttgttatt ... tattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATA
aaaactcagcatgacatttgatgtgagccattttgtcatggaatttattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCAT
atttgat putative branch site (score: 5)
tttatttt putative PPT
atggaatttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatattccttaccaaaagtcatgtatatattttttgactcatccaaaactcagcatgacatttgatgtgagccattttgtcatggaatttattttgcagATGAGCATTGGAAGGAAGTGGAAGGAAATCATAGATGTTAACGACAAGATAACATACAACTTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - -ccttacc
- - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - - - -tcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggaa