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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttgctttctagtttttaatctgtgcattgaactgtattgtgttgttatgttgaaatattgattcaacattacttcttcgaatgaagggcagTACGTTGAAACATGGCATATCGCTTCGTACACTTCTTCGCAACAGTGATAAACTTTCTGGTCCTGGTTTGCTG

Basic information

species Glycine max
transcript GLYMA20G21320.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G21320.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G05590.2 (Arabidopsis thaliana), 3'ss of exon 2
gtaattttgctttctagtttttaatctgtgcattgaactgtattgtgttgttatgttgaaatattgattcaacattacttcttcgaatgaagggcagTACGTTGAAACATGGCATATCGCTTCGTACACTTCTTCGCAACAGTGATAAACTTTCTGGTCCTGGTTTGCTG
            |   |   ||  | |  | ||     |     || |||  ||  ||   | | |  | ||| ||  ||  ||| |||||||||||||||||||||||||| ||||| |||||||| ||| | || |  ||||   | ||| |||||||| |||| |||
-----------gtaaggaagtttgttttcgtatcttgtttggaggttttggaattgtggtttttggtgttaacttt--tttatcggatgaagggcagTACGTTGAAACATGGTATATCACTTCGTACGCTTTTGCGAAGAAGTGGAGAGCTTCCTGGTCCTTGTTTACTG

upper sequence: GLYMA20G21320.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0049g01850.t01 (Vitis vinifera), 3'ss of exon 2
gtaa-ttttgctttctagtttttaatctgtgcattgaactgtattgtgttgttatgttgaaatattgattcaacattacttcttcgaa-tgaagggcagTACGTTGAAACATGGCATATCGCTTCGTACACTTCTTCGCAACAGTGATAAACTTTCTGGTCCTGGTTTGCTG
|| | |||||||  | |  |  ||  |||            ||   || | || | ||    | |||||||| |  |  |  ||  || ||||||||||||||||||||||||| ||||| || || |||||| |||| || |||| | | |||||||||||| ||||||||
gtgagttttgctaacaaagtaatagcctgca----------taagttgctcttgtatttggtttttgattcagctctgatcgtttaaaatgaagggcagTACGTTGAAACATGGTATATCACTCCGCACACTTATTCGTAAGAGTGCTGACCTTTCTGGTCCTTGTTTGCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgttgttatgttgaaatattgattcaacattacttcttcgaatgaagggcagTACGTTGAAACATGGCATATCGCTTCGTACACTTCTTCGCAACAGTGATAAACTTTCTGGTCCTGGTTTGCTG
                   tattgat  putative branch site (score: 3)
        ttatgttgaaatatt  TA-rich tract