1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcaggatattgtaaaatgttaagtgatataaaatattagctctaggacactattgtatttatactattgcatttttagattccgagtttctttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAG
species | Glycine max |
transcript | GLYMA20G18290.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACAEST: gi|192329677|gb|FK022943.1|FK022943
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACAEST: gi|24136395|gb|BU926905.1|BU926905
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACAEST: gi|10845842|gb|BF071193.1|BF071193
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG ATAGAAAAGCATGGTATAATTATTGAATNNTCTGATCCTGTCTATAACACAEST: gi|7327188|gb|AW621050.1|AW621050
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACAEST: gi|209702527|gb|BW667160.1|BW667160
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACAEST: gi|298180474|gb|HO022027.1|HO022027
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACAEST: gi|209727621|gb|BW663781.1|BW663781
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACAEST: gi|15285733|gb|BI469624.1|BI469624
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACAEST: gi|27424259|gb|CA935779.1|CA935779
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACAEST: gi|14012066|gb|BG726997.1|BG726997
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACAEST: gi|209708643|gb|BW678820.1|BW678820
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACAEST: gi|298192011|gb|HO036093.1|HO036093
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
EST: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAG ATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
genomic: TGTCTCTTCTTACTGACTATGAAGCTGCTAACCATTACCTTGACTGGGAGgtatgtgctg ... tttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACA
gacactattgtatttatactattgcatttttagattccgagtttctttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAG
tttctttcttgc CT-rich tract
tattgtatttatacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaggatattgtaaaatgttaagtgatataaaatattagctctaggacactattgtatttatactattgcatttttagattccgagtttctttcttgcagATAGAAAAGCATGGTATAATTATTGAATTTTCTGATCCTGTCTATAACACAAGGCGTAGTGCTACATACCTGCCTGAAGTGGCTGCCAATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
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