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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctgatctcatgattggaactctcaagatataatttcatttgcatcactggagatactcattcaaacatatttcattctgcagCCCTTTCATTAAGTCCTTCATTCAAGGTTTTCTGCCCGGTATTGTGTTGAAGCTATTCCTCATCTTCTTGCCAACAATATTGATGATCATGTCTAAATTT

Basic information

species Glycine max
transcript GLYMA20G16230.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G16230.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G04340.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagcctgatctcatgattggaactctcaagatataatttcatttgcatcactggagatactcattcaaac---atatttcattctgcagCCCTTTCATTAAGTCCTTCATTCAAGGTTTTCTGCCCGGTATTGTGTTGAAGCTATTCCTCATCTTCTTGCCAACAATATTGATGATCATGTCTAAATTT
|| ||     |       |   |    || |    | ||  ||||         | | ||  | | | | |    |  |||   |   |||   |||||| || ||  | || |||||||| ||  ||||||||| ||||||||| |||||||||||  ||||| | ||| |||||| |||||| ||||||
gtgagttctcttgttctctaaaattgttccattcttcatgacattaaatatgaggaacattttgactaacagtggacctttttgttcacagAGATTTCATAAAATCGCTGATACAAGGTTTGCTAGCCGGTATTGCGTTGAAGCTTTTCCTCATCTTTCTGCCAGCCATACTGATGACCATGTCCAAATTT

upper sequence: GLYMA20G16230.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G62320.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagcctgatctcatgattggaactctcaagatataatttcatttgcatcactggagatactcattcaaacatatttcattctgcagCCCTTTCATTAAGTCCTTCATTCAAGGTTTTCTGCCCGGTATTGTGTTGAAGCTATTCCTCATCTTCTTGCCAACAATATTGATGATCATGTCTAAATTT
||| |     |||||       |  | |  |  ||  ||||||     |   ||  |   | |  || |   || || | |  ||||||   || || || || || || ||||||||||| ||||||||||| |||||||| ||  | || ||| ||||||||||||||||||||||||| ||||| 
gtaggtacattctca-------agttttttacttaccatttcaagaataaggcttaattcaattcttgatcaatcttgcgtg-tgcagCAAGTTAATGAAATCATTGATCCAAGGTTTTCTTCCCGGTATTGTCTTGAAGCTCTTTTTGATATTCCTGCCAACAATATTGATGATCATGTCGAAATTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964347|gb|BM271083.1|BM271083
EST:     CTTGATGGAATCCAGAAAGCAGCACCATGGCTGAAGCCACTTGTTGACAT                         CCCTTTCATTAAGTCCTTCATTCAAGGTTTTCTGCCCGGTATTGTGTTGAA
genomic: CTTGATGGAATCCAGAAAGCAGCACCATGGCTGAAGCCACTTGTTGACATgtaagcctga ... cattctgcagCCCTTTCATTAAGTCCTTCATTCAAGGTTTTCTGCCCGGTATTGTGTTGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataatttcatttgcatcactggagatactcattcaaacatatttcattctgcagCCCTTTCATTAAGTCCTTCATTCAAGGTTTTCTGCCCGGTATTGTGTTGAAGCTATTCCTCATCTTCTTGCCAACAATATTGATGATCATGTCTAAATTT
                                          tttcattct  CT-rich tract
                               attcaaacatattt  TA-rich tract