1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...aatgattaattgtacatgaaatgaatgcatatggatgccatagcatgttctagctgttaataatggatattgtggtttgttgtgctttccattggtgcagGTGTATCTCAATGAATACACATTTCATATTCGGCATGCTTCAA
species | Glycine max |
transcript | GLYMA20G16030.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTTTGTTATCCCACTATTCTCGAAAGTTTCAAAGATTACGCTG GTGTATCTCAATGAATACACATTTCATATTCGGCATGCTTCAAEST: gi|120532986|gb|EH261119.1|EH261119
genomic: GCTTTGTTATCCCACTATTCTCGAAAGTTTCAAAGATTACGCTGgtacattata ... attggtgcagGTGTATCTCAATGAATACACATTTCATATTCGGCATGCTTCAA
EST: GCTTTGTTATCCCACTATTCTCGAAAGTTTCAAAGATTACGCTG GTGTATCTCAATGAATACACATTTCATATTCGGCATGCTTCAAEST: gi|120493251|gb|EH221418.1|EH221418
genomic: GCTTTGTTATCCCACTATTCTCGAAAGTTTCAAAGATTACGCTGgtacattata ... attggtgcagGTGTATCTCAATGAATACACATTTCATATTCGGCATGCTTCAA
EST: GCTTTGTTATCCCACTATTCTCGAAAGTTTCAAAGATTACGCTG GTGTATCTCAATGAATACACATTTCATATTCGGCATCCTTCAAEST: gi|192333705|gb|FK025792.1|FK025792
genomic: GCTTTGTTATCCCACTATTCTCGAAAGTTTCAAAGATTACGCTGgtacattata ... attggtgcagGTGTATCTCAATGAATACACATTTCATATTCGGCATGCTTCAA
EST: GCTTTGTTATCCCACTATTCTCGAAAGTTTCAAAGATTACGCTG GTGTATCTCAATGAATACACATTTCATATTCGGCATGCTTCAAEST: gi|12691307|gb|BG157643.1|BG157643
genomic: GCTTTGTTATCCCACTATTCTCGAAAGTTTCAAAGATTACGCTGgtacattata ... attggtgcagGTGTATCTCAATGAATACACATTTCATATTCGGCATGCTTCAA
EST: GCTTTGTTATCCCACTATTCTCGAAAGTTTCAAAGATTACGCTG GTGTATCTCAATGAATACACATTTCATATTCGGCATGCTTCAA
genomic: GCTTTGTTATCCCACTATTCTCGAAAGTTTCAAAGATTACGCTGgtacattata ... attggtgcagGTGTATCTCAATGAATACACATTTCATATTCGGCATGCTTCAA
tgttctagctgttaataatggatattgtggtttgttgtgctttccattggtgcagGTGTATCTCAATGAATACACATTTCATATTCGGCATGCTTCAA
tgttaat putative branch site (score: 3)
ctttccatt putative PPT
ttaataatggatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgattaattgtacatgaaatgaatgcatatggatgccatagcatgttctagctgttaataatggatattgtggtttgttgtgctttccattggtgcagGTGTATCTCAATGAATACACATTTCATATTCGGCATGCTTCAA
- - - - - - - catgaaa
- - - - - - - - - - - gaatgca
- - - - - - - - - - - - - - - - ggatgcc
- - - - - - - - - - - - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - gctgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtttg