1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgctgaatttttgttatgtcgtgcattacatgcctcctggggttgattttaaaatttaaagcaaattcaatataagagtgagcctacatgccttttcaatcactgagactgatgttatctctgaatatactttttttggttatagGTTTGGTATTTGTAGATTGCTCTGCTAGCTCTGACACTGTTGCGGTGCTAAAGCAAGCGATTGATATGGGTTGTTGTGCTGTTATGGCAAATAAGAAGCC
species | Glycine max |
transcript | GLYMA20G11950.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCACAAGGAAAGATTCTAGAGATTGCATTTCAACTTGGTAAAAAGACAG GTTTGGTATTTGTAGATTGCTCTGCTAGCTCTGACACTGTTGCGGTGCTAAEST: gi|209719845|gb|BW674997.1|BW674997
genomic: GTCACAAGGAAAGATTCTAGAGATTGCATTTCAACTTGGTAAAAAGACAGgtatgctgaa ... ttggttatagGTTTGGTATTTGTAGATTGCTCTGCTAGCTCTGACACTGTTGCGGTGCTAA
EST: GTCACAAGGAAAGATTCTAGAGATTGCATTTCAACTTGGTAAAAAGACAG GTTTGGTATTTGTAGATTGCTCTGCTAGCTCTGACACTGTTGCGGTGCTAAEST: gi|298178813|gb|HO024548.1|HO024548
genomic: GTCACAAGGAAAGATTCTAGAGATTGCATTTCAACTTGGTAAAAAGACAGgtatgctgaa ... ttggttatagGTTTGGTATTTGTAGATTGCTCTGCTAGCTCTGACACTGTTGCGGTGCTAA
EST: AAGATTCTAGAGATTGCATTTCAACTTGGTAAAAAGACAG GTTTGGTATTTGTAGATTGCTCTGCTAGCTCTGACACTGTCGCGGTGCTAAEST: gi|298164023|gb|HO013668.1|HO013668
genomic: AAGATTCTAGAGATTGCATTTCAACTTGGTAAAAAGACAGgtatgctgaa ... ttggttatagGTTTGGTATTTGTAGATTGCTCTGCTAGCTCTGACACTGTTGCGGTGCTAA
EST: GTCACAAGGAAAGATTCTAGAGATTGCATTTCAACTTGGTAAAAAGACAG GTTTGGTATTTGTAGATTGCTCTGCTAGCTCTGACACTGTTGCGGTGCTAA
genomic: GTCACAAGGAAAGATTCTAGAGATTGCATTTCAACTTGGTAAAAAGACAGgtatgctgaa ... ttggttatagGTTTGGTATTTGTAGATTGCTCTGCTAGCTCTGACACTGTTGCGGTGCTAA
ccttttcaatcactgagactgatgttatctctgaatatactttttttggttatagGTTTGGTATTTGTAGATTGCTCTGCTAGCTCTGACACTGTTGCGGTGCTAAAGCAAGCGATTGATATGGGTTGTTGTGCTGTTATGGCAAATAAGAAGCC
gactgat putative branch site (score: 3)
tacttttttt putative PPT
aatatactttttttgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctgaatttttgttatgtcgtgcattacatgcctcctggggttgattttaaaatttaaagcaaattcaatataagagtgagcctacatgccttttcaatcactgagactgatgttatctctgaatatactttttttggttatagGTTTGGTATTTGTAGATTGCTCTGCTAGCTCTGACACTGTTGCGGTGCTAAAGCAAGCGATTGATATGGGTTGTTGTGCTGTTATGGCAAATAAGAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC