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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcagtatactcttctaacattttaactgacacatatttatgaattttgttaagctgttgccatgttttgacattgttaggcatttgttatttggaatgtagTTGGATATAATGGACAGAGCTACTGATGCCCGAAATTTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAACCGTAGTCAGG

Basic information

species Glycine max
transcript GLYMA20G06670.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G06670.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os04g31190.1 (Oryza sativa), 3'ss of exon 3
gtgcagtatactcttctaacattttaactgacacatatttatgaattttgttaagctgttgccatgttttgacattgttaggcatttgttatttggaatgtagTTGGATATAATGGACAGAGCTACTGATGCCCGAAATTTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAACCGTAGTCAGG
        |||| ||  || || | |||        | |  || ||    || |    || |  |||  | ||  |||||  | |   | | | |     |||||||| || |||||||| |  |||||||| || || || ||||| ||||| || || || |||   ||||||||||||||||||||||| ||||| || |
-------gtacttttgcaatatataaac--------aatagtgcataccctttac---ttactttgtgatcactatgttaaccttgcttcaatgg---cctagTTGGACATCATGGACAGGGGCACTGATGCTCGTAACTTTTTACTGGGAAATGTGATCCCCCTCAAGCTTGGTTATGTAGGTGTTGTAAATCGTAGCCAAG

upper sequence: GLYMA20G06670.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 3'ss of exon 3
gtgcagtatactcttctaacattttaa-ctgacacatatttatg-aattttgttaagctgttgccatgttttgacattgttaggcatttgtt--atttggaatgt-agTTGGATATAATGGACAGAGCTACTGATGCCCGAAATTTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAACCGTAGTCAGG
||||  ||||      | |  ||||   || |   ||   | || ||  ||   ||||| ||  ||| || | |    ||| ||||  |     | ||| ||| | ||||||| || |||||||||| ||| |||||||| ||||| || || |||||||| ||||| || |||||||||||  |||||||||| || |||||||| |
gtgctatatatcaacttgatttttttgtcttatgaatgcctgtgcaacatttgcaagcttttatcattttctaatgaggtttggcaaataccccacttgtaatttcagTTGGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttaagctgttgccatgttttgacattgttaggcatttgttatttggaatgtagTTGGATATAATGGACAGAGCTACTGATGCCCGAAATTTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAACCGTAGTCAGG
                  ttttgac  putative branch site (score: 3)
                                   atttgttattt  TA-rich tract