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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttccaacatttcttgctctttcaagatattgcattggaattactgaatgtgaaatttataatctaactagtggtttaaaatcacaagGGAGATCGTTGTGGCATATATGGGTCCAACTGCCCTGAATGGATCATTGCAATGGAG

Basic information

species Glycine max
transcript GLYMA20G01060.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G01060.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G104847_T01 (Zea mays), 3'ss of exon 3
gtgagtttccaacattt------cttgctctttcaagatattg--cattggaat-tactgaatgtgaaatttata--atctaactagt-ggtttaaaatcacaagGGAGATCGTTGTGGCATATATGGGTCCAACTGCCCTGAATGGATCATTGCAATGGAG
||||||    ||| |||      | ||    |  | | | ||    ||| | || | |    ||   |||| ||   | |||||| ||    |    ||    |||||| ||  |||||||||||||| ||||||||||| |||||| | || || ||| ||
gtgagtgaagaacgtttgatgtccctgtctgtctatgttgttaattatttgtatgttcatcgtgaagaattaatggcaactaacttgtcaagtgtcgatggacagGGAGCTCACTGTGGCATATATGGATCCAACTGCCCGGAATGGGTTATGGCCATGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098208|gb|HO759949.1|HO759949
EST:     ATGCTGCCATGAAAATGGGTTCGGCCATAAGGAGCCGTGGTGTCAATCCT                         GGAGATCGTTGTGGCATATATGGGTCCAACTGCCCTGAATGGATCATTGCA
genomic: ATGCTGCCATGAAAATGGGTTCGGCCATAAGGAGCCGTGGTGTCAATCCTgtgagtttcc ... aaatcacaagGGAGATCGTTGTGGCATATATGGGTCCAACTGCCCTGAATGGATCATTGCA
EST: gi|192317444|gb|FK011262.1|FK011262
EST:     ATGCTGCCATGAAAATGGGTTCGGCCATAAGGAGCCGTGGTGTCAATCCT                         GGAGATCGTTGTGGCATATATGGGTCCAACTGCCCTGAATGGATCATTGCA
genomic: ATGCTGCCATGAAAATGGGTTCGGCCATAAGGAGCCGTGGTGTCAATCCTgtgagtttcc ... aaatcacaagGGAGATCGTTGTGGCATATATGGGTCCAACTGCCCTGAATGGATCATTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attggaattactgaatgtgaaatttataatctaactagtggtttaaaatcacaagGGAGATCGTTGTGGCATATATGGGTCCAACTGCCCTGAATGGATCATTGCAATGGAG
                            atctaac  putative branch site (score: 2)
             aatgtgaaatttataa  TA-rich tract